Literature DB >> 16263264

Structural biology of the thioester-dependent degradation and synthesis of fatty acids.

Prasenjit Bhaumik1, M Kristian Koski, Tuomo Glumoff, J Kalervo Hiltunen, Rik K Wierenga.   

Abstract

The fatty acid degradation and synthesis pathways consist of the same four chemical transformations. These transformations are facilitated by conjugating the fatty acid, via a thioester bond, to coenzyme A or acyl carrier protein in, respectively, the degradation and synthesis pathways. These pathways are compartmentalized in the peroxisomes, mitochondria and cytosol of eukaryotic cells. Current structural knowledge of the enzymes comprising these pathways shows that the approximately 130 entries in the RCSB Protein Data Bank can be grouped into seven superfamilies. Multifunctional enzymes are important in both pathways.

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Year:  2005        PMID: 16263264     DOI: 10.1016/j.sbi.2005.10.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  12 in total

1.  Crystal structure of liganded rat peroxisomal multifunctional enzyme type 1: a flexible molecule with two interconnected active sites.

Authors:  Prasad Kasaragod; Rajaram Venkatesan; Tiila R Kiema; J Kalervo Hiltunen; Rik K Wierenga
Journal:  J Biol Chem       Date:  2010-05-12       Impact factor: 5.157

Review 2.  Acylation of Biomolecules in Prokaryotes: a Widespread Strategy for the Control of Biological Function and Metabolic Stress.

Authors:  Kristy L Hentchel; Jorge C Escalante-Semerena
Journal:  Microbiol Mol Biol Rev       Date:  2015-07-15       Impact factor: 11.056

3.  Mechanical forces regulate the reactivity of a thioester bond in a bacterial adhesin.

Authors:  Daniel J Echelman; Alex Q Lee; Julio M Fernández
Journal:  J Biol Chem       Date:  2017-03-27       Impact factor: 5.157

4.  Cloning, expression, purification and preliminary X-ray diffraction studies of a putative Mycobacterium smegmatis thiolase.

Authors:  Neelanjana Janardan; Anju Paul; Rajesh K Harijan; Rikkert K Wierenga; M R N Murthy
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-06-30

5.  Phylogeny and evolution of aldehyde dehydrogenase-homologous folate enzymes.

Authors:  Kyle C Strickland; Roger S Holmes; Natalia V Oleinik; Natalia I Krupenko; Sergey A Krupenko
Journal:  Chem Biol Interact       Date:  2011-01-06       Impact factor: 5.192

6.  PPARγ-induced cardiolipotoxicity in mice is ameliorated by PPARα deficiency despite increases in fatty acid oxidation.

Authors:  Ni-Huiping Son; Shuiqing Yu; Joseph Tuinei; Kotaro Arai; Hiroko Hamai; Shunichi Homma; Gerald I Shulman; E Dale Abel; Ira J Goldberg
Journal:  J Clin Invest       Date:  2010-09-13       Impact factor: 14.808

7.  Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

Authors:  Holly J Atkinson; John H Morris; Thomas E Ferrin; Patricia C Babbitt
Journal:  PLoS One       Date:  2009-02-03       Impact factor: 3.240

8.  Subcellular distribution of key enzymes of lipid metabolism during the euthermia-hibernation-arousal cycle.

Authors:  Anna Suozzi; Manuela Malatesta; Carlo Zancanaro
Journal:  J Anat       Date:  2009-06       Impact factor: 2.610

9.  Chemoselectivity in chemical biology: acyl transfer reactions with sulfur and selenium.

Authors:  Nicholas A McGrath; Ronald T Raines
Journal:  Acc Chem Res       Date:  2011-06-03       Impact factor: 22.384

10.  Module structure of interphotoreceptor retinoid-binding protein (IRBP) may provide bases for its complex role in the visual cycle - structure/function study of Xenopus IRBP.

Authors:  Federico Gonzalez-Fernandez; Claxton A Baer; Debashis Ghosh
Journal:  BMC Biochem       Date:  2007-08-04       Impact factor: 4.059

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