Literature DB >> 16258039

Detection of forces and displacements along the axial direction in an optical trap.

Christopher Deufel1, Michelle D Wang.   

Abstract

We present measurements of the forces on, and displacements of, an optically trapped bead along the propagation direction of the trapping laser beam (the axial direction). In a typical experimental configuration, the bead is trapped in an aqueous solution using an oil-immersion, high-numerical-aperture objective. This refractive index mismatch complicates axial calibrations due to both a shift of the trap center along the axial direction and spherical aberrations. In this work, a known DNA template was unzipped along the axial direction and its characteristic unzipping force-extension data were used to determine 1), the location of the trap center along the axial direction; 2), the axial displacement of the bead from the trap center; and 3), the axial force exerted on the bead. These axial calibrations were obtained for trap center locations up to approximately 4 microm into the aqueous solution and with axial bead displacements up to approximately 600 nm from the trap center. In particular, the axial trap stiffness decreased substantially when the trap was located further into the aqueous solution. This approach, together with conventional lateral calibrations, results in a more versatile optical trapping instrument that is accurately calibrated in all three dimensions.

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Year:  2005        PMID: 16258039      PMCID: PMC1367070          DOI: 10.1529/biophysj.105.065458

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

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Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

4.  An automated two-dimensional optical force clamp for single molecule studies.

Authors:  Matthew J Lang; Charles L Asbury; Joshua W Shaevitz; Steven M Block
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

5.  Influence of a glass-water interface on the on-axis trapping of micrometer-sized spherical objects by optical tweezers.

Authors:  Erik Fällman; Ove Axner
Journal:  Appl Opt       Date:  2003-07-01       Impact factor: 1.980

6.  A single-molecule technique to study sequence-dependent transcription pausing.

Authors:  Alla Shundrovsky; Thomas J Santangelo; Jeffrey W Roberts; Michelle D Wang
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

7.  Optical trapping.

Authors:  Keir C Neuman; Steven M Block
Journal:  Rev Sci Instrum       Date:  2004-09       Impact factor: 1.523

8.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

9.  Movement and force produced by a single myosin head.

Authors:  J E Molloy; J E Burns; J Kendrick-Jones; R T Tregear; D C White
Journal:  Nature       Date:  1995-11-09       Impact factor: 49.962

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Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

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  15 in total

1.  DNA as a metrology standard for length and force measurements with optical tweezers.

Authors:  John Peter Rickgauer; Derek N Fuller; Douglas E Smith
Journal:  Biophys J       Date:  2006-09-08       Impact factor: 4.033

2.  Stretching submicron biomolecules with constant-force axial optical tweezers.

Authors:  Yih-Fan Chen; Gerhard A Blab; Jens-Christian Meiners
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

3.  Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

Authors:  Scott Forth; Christopher Deufel; Maxim Y Sheinin; Bryan Daniels; James P Sethna; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2008-04-08       Impact factor: 9.161

Review 4.  Axial Optical Traps: A New Direction for Optical Tweezers.

Authors:  Samuel Yehoshua; Russell Pollari; Joshua N Milstein
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

5.  An optical apparatus for rotation and trapping.

Authors:  Braulio Gutiérrez-Medina; Johan O L Andreasson; William J Greenleaf; Arthur Laporta; Steven M Block
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

6.  Practical axial optical trapping.

Authors:  A H Mack; D J Schlingman; L Regan; S G J Mochrie
Journal:  Rev Sci Instrum       Date:  2012-10       Impact factor: 1.523

7.  An improved optical tweezers assay for measuring the force generation of single kinesin molecules.

Authors:  Matthew P Nicholas; Lu Rao; Arne Gennerich
Journal:  Methods Mol Biol       Date:  2014

8.  Kinetics and thermodynamics of phenotype: unwinding and rewinding the nucleosome.

Authors:  Andrew H Mack; Daniel J Schlingman; Robielyn P Ilagan; Lynne Regan; Simon G J Mochrie
Journal:  J Mol Biol       Date:  2012-08-31       Impact factor: 5.469

9.  High Trap Stiffness Microcylinders for Nanophotonic Trapping.

Authors:  Ryan P Badman; Fan Ye; Wagma Caravan; Michelle D Wang
Journal:  ACS Appl Mater Interfaces       Date:  2019-07-05       Impact factor: 9.229

10.  Biocompatible and High Stiffness Nanophotonic Trap Array for Precise and Versatile Manipulation.

Authors:  Fan Ye; Ryan P Badman; James T Inman; Mohammad Soltani; Jessica L Killian; Michelle D Wang
Journal:  Nano Lett       Date:  2016-09-30       Impact factor: 11.189

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