Literature DB >> 16257914

[SSRHunter: development of a local searching software for SSR sites].

Qiang Li1, Jian-Min Wan.   

Abstract

Progress in genome research has made it possible to develop new SSR markers by bioinformatics in a relatively narrow region of genome. To realize it, the first thing is to search for potential SSR sites. Any known methods have more or less defects. Efforts were made to develop a local SSR sites searching software in this study. The resultant software, SSRHunter, could accomplish this task perfectly. Furthermore, SSRHunter could provide automatic pretreatment of sequences, routine arrangement of sequences, sequence transformation and convenient report output.

Mesh:

Year:  2005        PMID: 16257914

Source DB:  PubMed          Journal:  Yi Chuan        ISSN: 0253-9772


  74 in total

1.  Fine-mapping of qRfg2, a QTL for resistance to Gibberella stalk rot in maize.

Authors:  Dongfeng Zhang; Yongjie Liu; Yanling Guo; Qin Yang; Jianrong Ye; Shaojiang Chen; Mingliang Xu
Journal:  Theor Appl Genet       Date:  2011-11-03       Impact factor: 5.699

2.  Characterization, fine mapping and expression profiling of Ragged leaves1 in maize.

Authors:  Haiying Guan; Chaoxian Liu; Yuanzeng Zhao; Biao Zeng; Hainan Zhao; Yi Jiang; Weibin Song; Jinsheng Lai
Journal:  Theor Appl Genet       Date:  2012-05-31       Impact factor: 5.699

3.  The first genetic map of a synthesized allohexaploid Brassica with A, B and C genomes based on simple sequence repeat markers.

Authors:  S Yang; S Chen; X X Geng; G Yan; Z Y Li; J L Meng; W A Cowling; W J Zhou
Journal:  Theor Appl Genet       Date:  2016-01-18       Impact factor: 5.699

4.  Two genes conferring resistance to Pythium stalk rot in maize inbred line Qi319.

Authors:  Feng-Jing Song; Ming-Gang Xiao; Can-Xing Duan; Hong-Jie Li; Zhen-Dong Zhu; Bao-Tao Liu; Su-Li Sun; Xiao-Fei Wu; Xiao-Ming Wang
Journal:  Mol Genet Genomics       Date:  2015-02-28       Impact factor: 3.291

5.  Verification and fine mapping of qGW1.05, a major QTL for grain weight in maize (Zea mays L.).

Authors:  Qiang Zhou; Yongbin Dong; Qingling Shi; Long Zhang; Huanqing Chen; Chunhui Hu; Yuling Li
Journal:  Mol Genet Genomics       Date:  2017-04-12       Impact factor: 3.291

6.  Isolation and characterization of polymorphic microsatellites in the genome of yak (Bos grunniens).

Authors:  Xin Cai; TserangDonko Mipam; Fangfang Zhao; Lei Sun
Journal:  Mol Biol Rep       Date:  2014-02-23       Impact factor: 2.316

7.  Development of 10 microsatellite markers from Pantala flavescens and their applicability in studying genetics diversity.

Authors:  Lingzhen Cao; Xiaowei Fu; Kongming Wu
Journal:  Mol Biol Rep       Date:  2015-03-19       Impact factor: 2.316

8.  The maize d2003, a novel allele of VP8, is required for maize internode elongation.

Authors:  Hongkun Lv; Jun Zheng; Tianyu Wang; Junjie Fu; Junling Huai; Haowei Min; Xiang Zhang; Baohua Tian; Yunsu Shi; Guoying Wang
Journal:  Plant Mol Biol       Date:  2013-11-09       Impact factor: 4.076

9.  Fine mapping a major QTL for kernel number per row under different phosphorus regimes in maize (Zea mays L.).

Authors:  Guodong Zhang; Xiaopeng Wang; Bin Wang; Yanchen Tian; Meng Li; Yongxin Nie; Qingcai Peng; Zeli Wang
Journal:  Theor Appl Genet       Date:  2013-03-15       Impact factor: 5.699

10.  Development and characterization of polymorphic microsatellite markers in Linum usitatissimum.

Authors:  Xin Deng; Songhua Long; Dongfeng He; Xiang Li; Yufu Wang; Jia Liu; Xinbo Chen
Journal:  J Plant Res       Date:  2009-10-31       Impact factor: 2.629

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