Literature DB >> 19882206

Development and characterization of polymorphic microsatellite markers in Linum usitatissimum.

Xin Deng1, Songhua Long, Dongfeng He, Xiang Li, Yufu Wang, Jia Liu, Xinbo Chen.   

Abstract

Thirty-five microsatellite loci were isolated and characterized in Linum usitatissimum using enriched genomic libraries. These loci were screened in eight cultivars from different countries and regions and were found to be polymorphic, with the number of alleles per locus ranging from two to six, and observed and expected heterozygosities ranging from 0.125 to 0.375 (mean 0.013) and from 0.233 to 0.842 (mean 0.601), respectively. These polymorphic new microsatellite loci will be useful for genetic linkage map construction, germplasm classification and identification, gene identification and quantitative trait loci mapping, and marker-assisted selection in breeding in L. usitatissimum.

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Mesh:

Year:  2009        PMID: 19882206     DOI: 10.1007/s10265-009-0271-3

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  2 in total

1.  Primer3 on the WWW for general users and for biologist programmers.

Authors:  S Rozen; H Skaletsky
Journal:  Methods Mol Biol       Date:  2000

2.  [SSRHunter: development of a local searching software for SSR sites].

Authors:  Qiang Li; Jian-Min Wan
Journal:  Yi Chuan       Date:  2005-09
  2 in total
  9 in total

1.  Genetic diversity, population structure and association analysis in linseed (Linum usitatissimum L.).

Authors:  Neha Singh; Rajendra Kumar; Sujit Kumar; P K Singh; V K Yadav; S A Ranade; Hemant Kumar Yadav
Journal:  Physiol Mol Biol Plants       Date:  2017-01-04

2.  Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.).

Authors:  Sylvie Cloutier; Raja Ragupathy; Evelyn Miranda; Natasa Radovanovic; Elsa Reimer; Andrzej Walichnowski; Kerry Ward; Gordon Rowland; Scott Duguid; Mitali Banik
Journal:  Theor Appl Genet       Date:  2012-08-14       Impact factor: 5.699

3.  Simple sequence repeat marker development from bacterial artificial chromosome end sequences and expressed sequence tags of flax (Linum usitatissimum L.).

Authors:  Sylvie Cloutier; Evelyn Miranda; Kerry Ward; Natasa Radovanovic; Elsa Reimer; Andrzej Walichnowski; Raju Datla; Gordon Rowland; Scott Duguid; Raja Ragupathy
Journal:  Theor Appl Genet       Date:  2012-04-07       Impact factor: 5.699

4.  De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana.

Authors:  Wan Chen; Yu-Xiang Liu; Guo-Fang Jiang
Journal:  Sci Rep       Date:  2015-06-05       Impact factor: 4.379

5.  Outlier Loci and Selection Signatures of Simple Sequence Repeats (SSRs) in Flax (Linum usitatissimum L.).

Authors:  Braulio J Soto-Cerda; Sylvie Cloutier
Journal:  Plant Mol Biol Report       Date:  2013       Impact factor: 1.595

6.  Development of Novel SSR Markers for Flax (Linum usitatissimum L.) Using Reduced-Representation Genome Sequencing.

Authors:  Jianzhong Wu; Qian Zhao; Guangwen Wu; Shuquan Zhang; Tingbo Jiang
Journal:  Front Plant Sci       Date:  2017-01-13       Impact factor: 5.753

7.  Genetic characterization of a core collection of flax (Linum usitatissimum L.) suitable for association mapping studies and evidence of divergent selection between fiber and linseed types.

Authors:  Braulio J Soto-Cerda; Axel Diederichsen; Raja Ragupathy; Sylvie Cloutier
Journal:  BMC Plant Biol       Date:  2013-05-06       Impact factor: 4.215

8.  Association mapping of seed quality traits using the Canadian flax (Linum usitatissimum L.) core collection.

Authors:  Braulio J Soto-Cerda; Scott Duguid; Helen Booker; Gordon Rowland; Axel Diederichsen; Sylvie Cloutier
Journal:  Theor Appl Genet       Date:  2014-01-26       Impact factor: 5.699

9.  Genomic regions underlying agronomic traits in linseed (Linum usitatissimum L.) as revealed by association mapping.

Authors:  Braulio J Soto-Cerda; Scott Duguid; Helen Booker; Gordon Rowland; Axel Diederichsen; Sylvie Cloutier
Journal:  J Integr Plant Biol       Date:  2014-01       Impact factor: 7.061

  9 in total

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