Literature DB >> 16254179

Progress in modeling of protein structures and interactions.

Ora Schueler-Furman1, Chu Wang, Phil Bradley, Kira Misura, David Baker.   

Abstract

The prediction of the structures and interactions of biological macromolecules at the atomic level and the design of new structures and interactions are critical tests of our understanding of the interatomic interactions that underlie molecular biology. Equally important, the capability to accurately predict and design macromolecular structures and interactions would streamline the interpretation of genome sequence information and allow the creation of macromolecules with new and useful functions. This review summarizes recent progress in modeling that suggests that we are entering an era in which high-resolution prediction and design will make increasingly important contributions to biology and medicine.

Mesh:

Year:  2005        PMID: 16254179     DOI: 10.1126/science.1112160

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  84 in total

1.  Protein loop closure using orientational restraints from NMR data.

Authors:  Chittaranjan Tripathy; Jianyang Zeng; Pei Zhou; Bruce Randall Donald
Journal:  Proteins       Date:  2011-12-13

2.  Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.

Authors:  Oliver F Lange; Paolo Rossi; Nikolaos G Sgourakis; Yifan Song; Hsiau-Wei Lee; James M Aramini; Asli Ertekin; Rong Xiao; Thomas B Acton; Gaetano T Montelione; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

3.  An actin-filament-binding interface on the Arp2/3 complex is critical for nucleation and branch stability.

Authors:  Erin D Goley; Aravind Rammohan; Elizabeth A Znameroski; Elif Nur Firat-Karalar; David Sept; Matthew D Welch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Authors:  Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

5.  Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels.

Authors:  Vladimir Yarov-Yarovoy; David Baker; William A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

6.  Structure, redox, pKa, spin. A golden tetrad for understanding metalloenzyme energetics and reaction pathways.

Authors:  Louis Noodleman; Wen-Ge Han
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

7.  Prediction of structures of multidomain proteins from structures of the individual domains.

Authors:  Andrew M Wollacott; Alexandre Zanghellini; Paul Murphy; David Baker
Journal:  Protein Sci       Date:  2006-12-22       Impact factor: 6.725

8.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

9.  Membrane protein native state discrimination by implicit membrane models.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Comput Chem       Date:  2012-12-07       Impact factor: 3.376

10.  EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps.

Authors:  Steffen Lindert; René Staritzbichler; Nils Wötzel; Mert Karakaş; Phoebe L Stewart; Jens Meiler
Journal:  Structure       Date:  2009-07-15       Impact factor: 5.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.