Literature DB >> 16251464

Large-scale recombination rate patterns are conserved among human populations.

David Serre1, Robert Nadon, Thomas J Hudson.   

Abstract

In humans, most recombination events occur in a small fraction of the genome. These hotspots of recombination show considerable variation in intensity and/or location across species and, potentially, across human populations. On a larger scale, the patterns of recombination rates have been mostly investigated in individuals of European ancestry, and it remains unknown whether the results obtained can be directly applied to other human populations. Here, we investigate this question using genome-wide polymorphism data. We show that population recombination rates recapitulate a large part of the genetic map information, regardless of the population considered. We also show that the ratio of the population recombination rate estimate of two populations is overall constant along the chromosomes. These two observations support the hypothesis that large-scale recombination patterns are conserved across human populations. Local deviations from the overall pattern of conservation of the recombination rates can be used to select candidate regions with large polymorphic inversions or under local selection.

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Year:  2005        PMID: 16251464      PMCID: PMC1310642          DOI: 10.1101/gr.4211905

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  28 in total

1.  Two-locus sampling distributions and their application.

Authors:  R R Hudson
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

2.  A high-resolution recombination map of the human genome.

Authors:  Augustine Kong; Daniel F Gudbjartsson; Jesus Sainz; Gudrun M Jonsdottir; Sigurjon A Gudjonsson; Bjorgvin Richardsson; Sigrun Sigurdardottir; John Barnard; Bjorn Hallbeck; Gisli Masson; Adam Shlien; Stefan T Palsson; Michael L Frigge; Thorgeir E Thorgeirsson; Jeffrey R Gulcher; Kari Stefansson
Journal:  Nat Genet       Date:  2002-06-10       Impact factor: 38.330

3.  The International HapMap Project.

Authors: 
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

4.  Complex low-copy repeats associated with a common polymorphic inversion at human chromosome 8p23.

Authors:  Hirobumi Sugawara; Naoki Harada; Tomoko Ida; Takafumi Ishida; David H Ledbetter; Ko-ichiro Yoshiura; Tohru Ohta; Tatsuya Kishino; Norio Niikawa; Naomichi Matsumoto
Journal:  Genomics       Date:  2003-08       Impact factor: 5.736

5.  Evidence for substantial fine-scale variation in recombination rates across the human genome.

Authors:  Dana C Crawford; Tushar Bhangale; Na Li; Garrett Hellenthal; Mark J Rieder; Deborah A Nickerson; Matthew Stephens
Journal:  Nat Genet       Date:  2004-06-06       Impact factor: 38.330

6.  Insights into recombination from patterns of linkage disequilibrium in humans.

Authors:  Susan E Ptak; Kristian Voelpel; Molly Przeworski
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

Review 7.  Variation in human meiotic recombination.

Authors:  Audrey Lynn; Terry Ashley; Terry Hassold
Journal:  Annu Rev Genomics Hum Genet       Date:  2004       Impact factor: 8.929

8.  The fine-scale structure of recombination rate variation in the human genome.

Authors:  Gilean A T McVean; Simon R Myers; Sarah Hunt; Panos Deloukas; David R Bentley; Peter Donnelly
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

9.  Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates.

Authors:  Jeffrey D Wall; Linda A Frisse; Richard R Hudson; Anna Di Rienzo
Journal:  Am J Hum Genet       Date:  2003-11-18       Impact factor: 11.025

10.  Absence of the TAP2 human recombination hotspot in chimpanzees.

Authors:  Susan E Ptak; Amy D Roeder; Matthew Stephens; Yoav Gilad; Svante Pääbo; Molly Przeworski
Journal:  PLoS Biol       Date:  2004-06-15       Impact factor: 8.029

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  28 in total

1.  Fraction of informative recombinations: a heuristic approach to analyze recombination rates.

Authors:  J-F Lefebvre; D Labuda
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

2.  Recombination rates in admixed individuals identified by ancestry-based inference.

Authors:  Daniel Wegmann; Darren E Kessner; Krishna R Veeramah; Rasika A Mathias; Dan L Nicolae; Lisa R Yanek; Yan V Sun; Dara G Torgerson; Nicholas Rafaels; Thomas Mosley; Lewis C Becker; Ingo Ruczinski; Terri H Beaty; Sharon L R Kardia; Deborah A Meyers; Kathleen C Barnes; Diane M Becker; Nelson B Freimer; John Novembre
Journal:  Nat Genet       Date:  2011-07-20       Impact factor: 38.330

3.  Gene-dense autosomal chromosomes show evidence for increased selection.

Authors:  M Reza Jabalameli; Clare Horscroft; Alejandra Vergara-Lope; Reuben J Pengelly; Andrew Collins
Journal:  Heredity (Edinb)       Date:  2019-10-01       Impact factor: 3.821

4.  Population-Specific Recombination Maps from Segments of Identity by Descent.

Authors:  Ying Zhou; Brian L Browning; Sharon R Browning
Journal:  Am J Hum Genet       Date:  2020-06-12       Impact factor: 11.025

5.  Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome.

Authors:  Orly Goldstein; Barbara Zangerl; Sue Pearce-Kelling; Duska J Sidjanin; James W Kijas; Jeanette Felix; Gregory M Acland; Gustavo D Aguirre
Journal:  Genomics       Date:  2006-07-20       Impact factor: 5.736

6.  Genetic crossovers are predicted accurately by the computed human recombination map.

Authors:  Pavel P Khil; R Daniel Camerini-Otero
Journal:  PLoS Genet       Date:  2010-01-29       Impact factor: 5.917

7.  Recombinational landscape of porcine X chromosome and individual variation in female meiotic recombination associated with haplotypes of Chinese pigs.

Authors:  Junwu Ma; Nathalie Iannuccelli; Yanyu Duan; Weibing Huang; Beili Guo; Juliette Riquet; Lusheng Huang; Denis Milan
Journal:  BMC Genomics       Date:  2010-03-09       Impact factor: 3.969

Review 8.  The synaptonemal complex and meiotic recombination in humans: new approaches to old questions.

Authors:  Rhea U Vallente; Edith Y Cheng; Terry J Hassold
Journal:  Chromosoma       Date:  2006-03-18       Impact factor: 4.316

Review 9.  Variation in patterns of human meiotic recombination.

Authors:  P P Khil; R D Camerini-Otero
Journal:  Genome Dyn       Date:  2009

10.  More genes underwent positive selection in chimpanzee evolution than in human evolution.

Authors:  Margaret A Bakewell; Peng Shi; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-20       Impact factor: 11.205

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