Literature DB >> 16240716

[Tuning of expression level of the genes of interest located in the bacterial chromosome].

Zh I Katashkina, A Iu Skorokhodova, D V Zimenkov, A Iu Gulevich, N I Minaeva, V G Doroshenko, I V Biriukova, S V Mashko.   

Abstract

The new method of construction of the set of E. coli clones, differing in the promoter strength upstream the gene of interest, has been developed and tested using native E. coli MG 1655 lacZ gene as the reporter. This method includes the construction of the promoter-carrying DNA fragment obtained by PCR with consensus P(tac) as a template and the primers that lead to randomization of 4 central nucleotides in the promoter "-35"-region, linking the obtained fragments with the selective marker (Cm(R)) followed by Red-driven integration of the resulted DNA fragments directly in E. coli MG1655 chromosome instead the native lacI-gene and promoter/operator region of lac-operon. Due to direct determination of LacZ-activity in the independently obtained clones-integrants, we have found 14 new promoters (from 44 = 256 possible variants) that differ in their strength up to 100 fold (LacZ-activity in the corresponding strains smoothly varies from 10(2) for the weakest tested promoter up to 10(4) Miller U detected for the initial P(tac)). Sequencing of obtained promoters revealed that randomization of three positions in the "-35"-region is sufficient to obtain representative promoter library that would decrease the total number of potential promoter variants from 256 up to 64. It seems probable that exploiting of the developed method leading to one-step construction the library of clones with varied expression of gene/operon of interest could be useful tool in the modem metabolic engineering for optimization of genes expression.

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Year:  2005        PMID: 16240716

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  7 in total

Review 1.  Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria--mini review.

Authors:  Valerii Z Akhverdyan; Evgueni R Gak; Irina L Tokmakova; Nataliya V Stoynova; Yurgis A V Yomantas; Sergey V Mashko
Journal:  Appl Microbiol Biotechnol       Date:  2011-06-23       Impact factor: 4.813

2.  Engineering of Escherichia coli Glyceraldehyde-3-Phosphate Dehydrogenase with Dual NAD+/NADP+ Cofactor Specificity for Improving Amino Acid Production.

Authors:  Ekaterina A Slivinskaya; Natalia S Plekhanova; Irina B Altman; Tatiana A Yampolskaya
Journal:  Microorganisms       Date:  2022-05-06

3.  [Cloning, expression and comparative analysis of peroxiredoxine 6 from different species].

Authors:  M G Sharapov; V I Novoselov; V K Ravin
Journal:  Mol Biol (Mosk)       Date:  2009 May-Jun

4.  Dual-In/Out strategy for genes integration into bacterial chromosome: a novel approach to step-by-step construction of plasmid-less marker-less recombinant E. coli strains with predesigned genome structure.

Authors:  Natalia I Minaeva; Evgeny R Gak; Danila V Zimenkov; Aleksandra Yu Skorokhodova; Irina V Biryukova; Sergey V Mashko
Journal:  BMC Biotechnol       Date:  2008-08-12       Impact factor: 2.563

5.  Impact of an energy-conserving strategy on succinate production under weak acidic and anaerobic conditions in Enterobacter aerogenes.

Authors:  Yoshinori Tajima; Yoko Yamamoto; Keita Fukui; Yousuke Nishio; Kenichi Hashiguchi; Yoshihiro Usuda; Koji Sode
Journal:  Microb Cell Fact       Date:  2015-06-11       Impact factor: 5.328

6.  Comparative Analysis of Catabolic and Anabolic Dehydroshikimate Dehydratases for 3,4-DHBA Production in Escherichia coli.

Authors:  Ekaterina A Shmonova; Ekaterina A Savrasova; Elizaveta N Fedorova; Vera G Doroshenko
Journal:  Microorganisms       Date:  2022-07-05

7.  The Escherichia coli Amino Acid Uptake Protein CycA: Regulation of Its Synthesis and Practical Application in l-Isoleucine Production.

Authors:  Christine Hook; Natalya Eremina; Petr Zaytsev; Daria Varlamova; Nataliya Stoynova
Journal:  Microorganisms       Date:  2022-03-17
  7 in total

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