Literature DB >> 16238319

How H-bonding modifies molecular structure and pi-electron delocalization in the ring of pyridine/pyridinium derivatives involved in H-bond complexation.

Tadeusz M Krygowski1, Halina Szatyłowicz, Joanna E Zachara.   

Abstract

[structure: see text] Analysis of the experimental geometry of 397 variously substituted pyridine and pyridinium derivatives has shown very little variation of all bond lengths in the ring and substantial changes in the values of alpha and beta angles, being in line with theoretically modeled data (at the B3LYP/6-311+G level of theory). No dependence of bond lengths and pi-electron delocalization in the ring measured by HOMA index on the changes in bond angle at the N-atom is observed. This is at variance with the patterns observed in substituted phenolate/phenol systems involved in H-bonding. Due to significant differences in magnitude of the ipso angle at the nitrogen atom that depend on the location of hydrogen atom in pyridine/pyridinium systems (N, N...H, and N-H), this angle may be used as a valuable indicator of N...H interactions since the X-ray structural analysis does not give a reliable position for the proton.

Entities:  

Year:  2005        PMID: 16238319     DOI: 10.1021/jo051354h

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  6 in total

1.  Hydroxyl group as a substituent with varying electronic properties: effect of strength of H-bonding on charge density changes in Ph-OH…F⁻ complexes.

Authors:  Halina Szatyłowicz; Tadeusz Marek Krygowski; Aneta Jezierska-Mazzarello
Journal:  J Mol Model       Date:  2010-04-11       Impact factor: 1.810

2.  Hydrogen bond design principles.

Authors:  Lucas J Karas; Chia-Hua Wu; Ranjita Das; Judy I-Chia Wu
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2020-05-16

3.  4-(Ammonio-meth-yl)pyridinium dichloride.

Authors:  Meher El Glaoui; Riadh Kefi; Olfa Amri; Erwann Jeanneau; Cherif Ben Nasr
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-25

4.  Cadmium(II) complexes of the glycerophosphodiester-degrading enzyme GpdQ and a biomimetic N,O ligand.

Authors:  Ruth E Mirams; Sarah J Smith; Kieran S Hadler; David L Ollis; Gerhard Schenk; Lawrence R Gahan
Journal:  J Biol Inorg Chem       Date:  2008-06-06       Impact factor: 3.358

5.  Poly(vinyl pyridine) and Its Quaternized Derivatives: Understanding Their Solvation and Solid State Properties.

Authors:  Katerina Mavronasou; Alexandra Zamboulis; Panagiotis Klonos; Apostolos Kyritsis; Dimitrios N Bikiaris; Raffaello Papadakis; Ioanna Deligkiozi
Journal:  Polymers (Basel)       Date:  2022-02-19       Impact factor: 4.329

6.  Bis(2,4,6-tri-amino-pyrimidin-1-ium) sulfate penta-hydrate.

Authors:  Ruthairat Nimthong; Siva Chamchong; Chaveng Pakawatchai; Jedsada Mokhagul; Yupa Wattanakanjana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-17
  6 in total

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