Literature DB >> 16230118

Structure and mechanism of DNA polymerases.

Paul J Rothwell1, Gabriel Waksman.   

Abstract

DNA polymerases are molecular motors directing the synthesis of DNA from nucleotides. All polymerases have a common architectural framework consisting of three canonical subdomains termed the fingers, palm, and thumb subdomains. Kinetically, they cycle through various states corresponding to conformational transitions, which may or may not generate force. In this review, we present and discuss the kinetic, structural, and single-molecule works that have contributed to our understanding of DNA polymerase function.

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Year:  2005        PMID: 16230118     DOI: 10.1016/S0065-3233(04)71011-6

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN: 0065-3233


  114 in total

Review 1.  Viral polymerases.

Authors:  Kyung H Choi
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

2.  Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.

Authors:  Weina Wang; Homme W Hellinga; Lorena S Beese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

3.  Mechanism of replication blocking and bypass of Y-family polymerase {eta} by bulky acetylaminofluorene DNA adducts.

Authors:  Stephanie Schorr; Sabine Schneider; Katja Lammens; Karl-Peter Hopfner; Thomas Carell
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-12       Impact factor: 11.205

4.  Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.

Authors:  Weina Wang; Eugene Y Wu; Homme W Hellinga; Lorena S Beese
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

5.  A unique error signature for human DNA polymerase nu.

Authors:  Mercedes E Arana; Kei-ichi Takata; Miguel Garcia-Diaz; Richard D Wood; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2006-11-21

Review 6.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

7.  Structural insights into DNA replication without hydrogen bonds.

Authors:  Karin Betz; Denis A Malyshev; Thomas Lavergne; Wolfram Welte; Kay Diederichs; Floyd E Romesberg; Andreas Marx
Journal:  J Am Chem Soc       Date:  2013-11-27       Impact factor: 15.419

8.  INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.

Authors:  José María Barrero; Rebeca González-Bayón; Juan Carlos del Pozo; María Rosa Ponce; José Luis Micol
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

9.  Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli.

Authors:  Kwang Young Seo; Jun Yin; Prashant Donthamsetti; Sushil Chandani; Chui Hong Lee; Edward L Loechler
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469

10.  Replication across template T/U by human DNA polymerase-iota.

Authors:  Rinku Jain; Deepak T Nair; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2009-07-15       Impact factor: 5.006

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