Literature DB >> 16229621

Reactions on cell membranes: comparison of continuum theory and Brownian dynamics simulations.

Michael I Monine1, Jason M Haugh.   

Abstract

Biochemical transduction of signals received by living cells typically involves molecular interactions and enzyme-mediated reactions at the cell membrane, a problem that is analogous to reacting species on a catalyst surface or interface. We have developed an efficient Brownian dynamics algorithm that is especially suited for such systems and have compared the simulation results with various continuum theories through prediction of effective enzymatic rate constant values. We specifically consider reaction versus diffusion limitation, the effect of increasing enzyme density, and the spontaneous membrane association/dissociation of enzyme molecules. In all cases, we find the theory and simulations to be in quantitative agreement. This algorithm may be readily adapted for the stochastic simulation of more complex cell signaling systems.

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Year:  2005        PMID: 16229621      PMCID: PMC1752218          DOI: 10.1063/1.2000236

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  17 in total

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3.  Mode of coupling between the beta-adrenergic receptor and adenylate cyclase in turkey erythrocytes.

Authors:  A M Tolkovsky; A Levitzki
Journal:  Biochemistry       Date:  1978-09-05       Impact factor: 3.162

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Authors:  L D Shea; G M Omann; J J Linderman
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

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Authors:  J M Haugh; D A Lauffenburger
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

6.  Interaction between proteins localized in membranes.

Authors:  B Grasberger; A P Minton; C DeLisi; H Metzger
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

7.  A Monte Carlo study of the dynamics of G-protein activation.

Authors:  P A Mahama; J J Linderman
Journal:  Biophys J       Date:  1994-09       Impact factor: 4.033

Review 8.  The myristoyl-electrostatic switch: a modulator of reversible protein-membrane interactions.

Authors:  S McLaughlin; A Aderem
Journal:  Trends Biochem Sci       Date:  1995-07       Impact factor: 13.807

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Authors:  J Keizer; J Ramirez; E Peacock-López
Journal:  Biophys J       Date:  1985-01       Impact factor: 4.033

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Authors:  B Goldstein; C Wofsy; H Echavarría-Heras
Journal:  Biophys J       Date:  1988-03       Impact factor: 4.033

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Journal:  PLoS Comput Biol       Date:  2006-05-12       Impact factor: 4.475

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9.  The Influence of Molecular Reach and Diffusivity on the Efficacy of Membrane-Confined Reactions.

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  9 in total

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