Literature DB >> 16226885

Genomic inferences from Afrotheria and the evolution of elephants.

Alfred L Roca1, Stephen J O'Brien.   

Abstract

Recent genetic studies have established that African forest and savanna elephants are distinct species with dissociated cytonuclear genomic patterns, and have identified Asian elephants from Borneo and Sumatra as conservation priorities. Representative of Afrotheria, a superordinal clade encompassing six eutherian orders, the African savanna elephant was among the first mammals chosen for whole-genome sequencing to provide a comparative understanding of the human genome. Elephants have large and complex brains and display advanced levels of social structure, communication, learning and intelligence. The elephant genome sequence might prove useful for comparative genomic studies of these advanced traits, which have appeared independently in only three mammalian orders: primates, cetaceans and proboscideans.

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Year:  2005        PMID: 16226885     DOI: 10.1016/j.gde.2005.09.014

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  11 in total

1.  Genome size: a novel genomic signature in support of Afrotheria.

Authors:  Carlo Alberto Redi; Silvia Garagna; Maurizio Zuccotti; Ernesto Capanna
Journal:  J Mol Evol       Date:  2007-03-19       Impact factor: 2.395

2.  Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries.

Authors:  Morris Goodman; Kirstin N Sterner; Munirul Islam; Monica Uddin; Chet C Sherwood; Patrick R Hof; Zhuo-Cheng Hou; Leonard Lipovich; Hui Jia; Lawrence I Grossman; Derek E Wildman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

3.  Cyto-nuclear genomic dissociation and the African elephant species question.

Authors:  Alfred L Roca; Nicholas Georgiadis; Stephen J O'Brien
Journal:  Quat Int       Date:  2007-07       Impact factor: 2.130

4.  Triangulating the provenance of African elephants using mitochondrial DNA.

Authors:  Yasuko Ishida; Nicholas J Georgiadis; Tomoko Hondo; Alfred L Roca
Journal:  Evol Appl       Date:  2012-08-01       Impact factor: 5.183

5.  Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants.

Authors:  Yasuko Ishida; Taras K Oleksyk; Nicholas J Georgiadis; Victor A David; Kai Zhao; Robert M Stephens; Sergios-Orestis Kolokotronis; Alfred L Roca
Journal:  PLoS One       Date:  2011-06-08       Impact factor: 3.240

6.  Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants.

Authors:  Nadin Rohland; David Reich; Swapan Mallick; Matthias Meyer; Richard E Green; Nicholas J Georgiadis; Alfred L Roca; Michael Hofreiter
Journal:  PLoS Biol       Date:  2010-12-21       Impact factor: 8.029

7.  Chromosome painting among Proboscidea, Hyracoidea and Sirenia: support for Paenungulata (Afrotheria, Mammalia) but not Tethytheria.

Authors:  A T Pardini; P C M O'Brien; B Fu; R K Bonde; F F B Elder; M A Ferguson-Smith; F Yang; T J Robinson
Journal:  Proc Biol Sci       Date:  2007-05-22       Impact factor: 5.349

8.  Genetic variation at hair length candidate genes in elephants and the extinct woolly mammoth.

Authors:  Alfred L Roca; Yasuko Ishida; Nikolas Nikolaidis; Sergios-Orestis Kolokotronis; Stephen Fratpietro; Kristin Stewardson; Shannon Hensley; Michele Tisdale; Gennady Boeskorov; Alex D Greenwood
Journal:  BMC Evol Biol       Date:  2009-09-11       Impact factor: 3.260

9.  Devastating decline of forest elephants in central Africa.

Authors:  Fiona Maisels; Samantha Strindberg; Stephen Blake; George Wittemyer; John Hart; Elizabeth A Williamson; Rostand Aba'a; Gaspard Abitsi; Ruffin D Ambahe; Fidèl Amsini; Parfait C Bakabana; Thurston Cleveland Hicks; Rosine E Bayogo; Martha Bechem; Rene L Beyers; Anicet N Bezangoye; Patrick Boundja; Nicolas Bout; Marc Ella Akou; Lambert Bene Bene; Bernard Fosso; Elizabeth Greengrass; Falk Grossmann; Clement Ikamba-Nkulu; Omari Ilambu; Bila-Isia Inogwabini; Fortune Iyenguet; Franck Kiminou; Max Kokangoye; Deo Kujirakwinja; Stephanie Latour; Innocent Liengola; Quevain Mackaya; Jacob Madidi; Bola Madzoke; Calixte Makoumbou; Guy-Aimé Malanda; Richard Malonga; Olivier Mbani; Valentin A Mbendzo; Edgar Ambassa; Albert Ekinde; Yves Mihindou; Bethan J Morgan; Prosper Motsaba; Gabin Moukala; Anselme Mounguengui; Brice S Mowawa; Christian Ndzai; Stuart Nixon; Pele Nkumu; Fabian Nzolani; Lilian Pintea; Andrew Plumptre; Hugo Rainey; Bruno Bokoto de Semboli; Adeline Serckx; Emma Stokes; Andrea Turkalo; Hilde Vanleeuwe; Ashley Vosper; Ymke Warren
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

10.  Evidence of positive selection in mitochondrial complexes I and V of the African elephant.

Authors:  Tabitha M Finch; Nan Zhao; Dmitry Korkin; Katy H Frederick; Lori S Eggert
Journal:  PLoS One       Date:  2014-04-02       Impact factor: 3.240

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