Literature DB >> 17479346

Genome size: a novel genomic signature in support of Afrotheria.

Carlo Alberto Redi1, Silvia Garagna, Maurizio Zuccotti, Ernesto Capanna.   

Abstract

Molecular phylogenetic analyses suggest an emerging phylogeny for the extant Placentalia (eutherian) that radically departs from morphologically based constructions of the past. Placental mammals are partitioned into four supraordinal clades: Afrotheria, Xenarthra, Laurasiatheria, and Euarchontoglires. Afrotheria form an endemic African clade that includes elephant shrews, golden moles, tenrecs, aardvarks, hyraxes, elephants, dugongs, and manatees. Datamining databases of genome size (GS) shows that till today just one afrotherian GS has been evaluated, that of the aardvark Orycteropus afer. We show that the GSs of six selected representatives across the Afrotheria supraordinal group are among the highest for the extant Placentalia, providing a novel genomic signature of this enigmatic group. The mean GS value of Afrotheria, 5.3 +/- 0.7 pg, is the highest reported for the extant Placentalia. This should assist in planning new genome sequencing initiatives.

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Year:  2007        PMID: 17479346     DOI: 10.1007/s00239-006-0237-1

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  15 in total

1.  Afrotheria: plate tectonics meets genomics.

Authors:  S B Hedges
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

2.  Ancient SINEs from African endemic mammals.

Authors:  Masato Nikaido; Hidenori Nishihara; Yukio Hukumoto; Norihiro Okada
Journal:  Mol Biol Evol       Date:  2003-03-05       Impact factor: 16.240

3.  Nuclear DNA content and genome size of trout and human.

Authors:  J Dolezel; J Bartos; H Voglmayr; J Greilhuber
Journal:  Cytometry A       Date:  2003-02       Impact factor: 4.355

Review 4.  Evolution of genome size: multilevel selection, mutation bias or dynamical chaos?

Authors:  Alexander E Vinogradov
Journal:  Curr Opin Genet Dev       Date:  2004-12       Impact factor: 5.578

5.  Genome sizes in afrotheria, xenarthra, euarchontoglires, and laurasiatheria.

Authors:  C A Redi; H Zacharias; S Merani; M Oliveira-Miranda; M Aguilera; M Zuccotti; S Garagna; E Capanna
Journal:  J Hered       Date:  2005-06-30       Impact factor: 2.645

6.  The Zoogeography of Mammalian Basal Metabolic Rate.

Authors:  Barry G Lovegrove
Journal:  Am Nat       Date:  2000-08       Impact factor: 3.926

7.  Relationship of aardvark to elephants, hyraxes and sea cows from alpha-crystallin sequences.

Authors:  W W de Jong; A Zweers; M Goodman
Journal:  Nature       Date:  1981-08-06       Impact factor: 49.962

Review 8.  Mammalian phylogenomics comes of age.

Authors:  William J Murphy; Pavel A Pevzner; Stephen J O'Brien
Journal:  Trends Genet       Date:  2004-12       Impact factor: 11.639

9.  NUCLEOTYPIC EFFECT IN HOMEOTHERMS: BODY-MASS-CORRECTED BASAL METABOLIC RATE OF MAMMALS IS RELATED TO GENOME SIZE.

Authors:  Alexander E Vinogradov
Journal:  Evolution       Date:  1995-12       Impact factor: 3.694

10.  Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype.

Authors:  F Yang; E Z Alkalaeva; P L Perelman; A T Pardini; W R Harrison; P C M O'Brien; B Fu; A S Graphodatsky; M A Ferguson-Smith; T J Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-24       Impact factor: 11.205

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  6 in total

1.  There shall be order. The legacy of Linnaeus in the age of molecular biology.

Authors:  Marta Paterlini
Journal:  EMBO Rep       Date:  2007-09       Impact factor: 8.807

2.  Reading between the LINEs to see into the past.

Authors:  David A Ray; Roy N Platt; Mark A Batzer
Journal:  Trends Genet       Date:  2009-11       Impact factor: 11.639

3.  Tracking the past: interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius.

Authors:  Fangqing Zhao; Ji Qi; Stephan C Schuster
Journal:  Genome Res       Date:  2009-06-09       Impact factor: 9.043

4.  Imperfect isolation: factors and filters shaping Madagascar's extant vertebrate fauna.

Authors:  Karen E Samonds; Laurie R Godfrey; Jason R Ali; Steven M Goodman; Miguel Vences; Michael R Sutherland; Mitchell T Irwin; David W Krause
Journal:  PLoS One       Date:  2013-04-23       Impact factor: 3.240

5.  New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains.

Authors:  Carsten Schwarz; Regis Debruyne; Melanie Kuch; Elizabeth McNally; Henry Schwarcz; Andrew D Aubrey; Jeffrey Bada; Hendrik Poinar
Journal:  Nucleic Acids Res       Date:  2009-03-24       Impact factor: 16.971

6.  Genome size evaluations in cockroaches: new entries.

Authors:  Manuela Monti; CarloAlberto Redi; Ernesto Capanna
Journal:  Eur J Histochem       Date:  2022-03-25       Impact factor: 3.188

  6 in total

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