Literature DB >> 16218948

Histones in functional diversification. Core histone variants.

Rama-Haritha Pusarla1, Purnima Bhargava.   

Abstract

Recent research suggests that minor changes in the primary sequence of the conserved histones may become major determinants for the chromatin structure regulating gene expression and other DNA-related processes. An analysis of the involvement of different core histone variants in different nuclear processes and the structure of different variant nucleosome cores shows that this may indeed be so. Histone variants may also be involved in demarcating functional regions of the chromatin. We discuss in this review why two of the four core histones show higher variation. A comparison of the status of variants in yeast with those from higher eukaryotes suggests that histone variants have evolved in synchrony with functional requirement of the cell.

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Year:  2005        PMID: 16218948     DOI: 10.1111/j.1742-4658.2005.04930.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  21 in total

Review 1.  Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis".

Authors:  Sandra B Hake; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-29       Impact factor: 11.205

2.  Liquid chromatography mass spectrometry profiling of histones.

Authors:  Xiaodan Su; Naduparambil K Jacob; Ravindra Amunugama; David M Lucas; Amy R Knapp; Chen Ren; Melanie E Davis; Guido Marcucci; Mark R Parthun; John C Byrd; Richard Fishel; Michael A Freitas
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2007-01-07       Impact factor: 3.205

3.  Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen.

Authors:  Takashi Okada; Mohan B Singh; Prem L Bhalla
Journal:  Plant Mol Biol       Date:  2006-08-17       Impact factor: 4.076

4.  Chromatin structure and expression of a gene transcribed by RNA polymerase III are independent of H2A.Z deposition.

Authors:  Aneeshkumar Gopalakrishnan Arimbasseri; Purnima Bhargava
Journal:  Mol Cell Biol       Date:  2008-02-11       Impact factor: 4.272

5.  A phosphorylated subpopulation of the histone variant macroH2A1 is excluded from the inactive X chromosome and enriched during mitosis.

Authors:  Emily Bernstein; Tara L Muratore-Schroeder; Robert L Diaz; Jennifer C Chow; Lakshmi N Changolkar; Jeffrey Shabanowitz; Edith Heard; John R Pehrson; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-28       Impact factor: 11.205

Review 6.  Hypoxia-induced and stress-specific changes in chromatin structure and function.

Authors:  Amber Buescher Johnson; Michelle Craig Barton
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

7.  Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y.

Authors:  Sonja M Wiedemann; Silke N Mildner; Clemens Bönisch; Lars Israel; Andreas Maiser; Sarah Matheisl; Tobias Straub; Rainer Merkl; Heinrich Leonhardt; Elisabeth Kremmer; Lothar Schermelleh; Sandra B Hake
Journal:  J Cell Biol       Date:  2010-09-06       Impact factor: 10.539

8.  Statistical mechanics of chromosomes: in vivo and in silico approaches reveal high-level organization and structure arise exclusively through mechanical feedback between loop extruders and chromatin substrate properties.

Authors:  Yunyan He; Josh Lawrimore; Diana Cook; Elizabeth Erin Van Gorder; Solenn Claire De Larimat; David Adalsteinsson; M Gregory Forest; Kerry Bloom
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

9.  Binding kinetics of histone chaperone Chz1 and variant histone H2A.Z-H2B by relaxation dispersion NMR spectroscopy.

Authors:  D Flemming Hansen; Zheng Zhou; Haniqiao Feng; Lisa M Miller Jenkins; Yawen Bai; Lewis E Kay
Journal:  J Mol Biol       Date:  2009-03-20       Impact factor: 5.469

Review 10.  Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations.

Authors:  Özlem Önder; Simone Sidoli; Martin Carroll; Benjamin A Garcia
Journal:  Expert Rev Proteomics       Date:  2015       Impact factor: 3.940

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