Literature DB >> 16208003

Oligonucleotide ligation assay for detection of mutations associated with reverse transcriptase and protease inhibitor resistance in non-B subtypes and recombinant forms of human immunodeficiency virus type 1.

Yolanda Vega1, Lucía Pérez-Alvárez, Elena Delgado, Mercedes Muñoz, Gema Casado, Rocío Carmona, María Sierra, Elena Vázquez de Parga, Milagros Pinilla, Valentina García, Leandro Medrano, Gerardo Contreras, Miguel Thomson, Rafael Nájera.   

Abstract

The oligonucleotide ligation assay is a genotypic assay for the detection of resistance-associated mutations to reverse transcriptase and protease inhibitors in human immunodeficiency virus type 1 subtype B. This assay has been modified and developed for non-B subtypes and recombinant strains and has been evaluated with sequencing, resulting in a more sensitive assay than sequencing for non-B subtypes.

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Year:  2005        PMID: 16208003      PMCID: PMC1248433          DOI: 10.1128/JCM.43.10.5301-5304.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  16 in total

1.  Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay.

Authors:  Michael Hoelscher; William E Dowling; Eric Sanders-Buell; Jean K Carr; Matthew E Harris; Angelika Thomschke; Merlin L Robb; Deborah L Birx; Francine E McCutchan
Journal:  AIDS       Date:  2002-10-18       Impact factor: 4.177

2.  Performance of the VERSANT HIV-1 resistance assays (LiPA) for detecting drug resistance in therapy-naive patients infected with different HIV-1 subtypes.

Authors:  Inge Derdelinckx; Kristel Van Laethem; Bart Maes; Yoeri Schrooten; Kirsten De Schouwer; Stéphane De Wit; Katrien Fransen; Sergio García Ribas; Michel Moutschen; Dolores Vaira; Georges Zissis; Marc Van Ranst; Eric Van Wijngaerden; Anne Mieke Vandamme
Journal:  FEMS Immunol Med Microbiol       Date:  2003-11-28

3.  HIV and AIDS: 20 years of science.

Authors:  Anthony S Fauci
Journal:  Nat Med       Date:  2003-07       Impact factor: 53.440

4.  Evaluation of an oligonucleotide ligation assay for detection of mutations in HIV-1 subtype C individuals who have high level resistance to nucleoside reverse transcriptase inhibitors and non-nucleoside reverse transcriptase inhibitors.

Authors:  Carole Lorraine Wallis; Imraan Mahomed; Lynn Morris; Thato Chidarikire; Gwynn Stevens; Natela Rekhviashvili; Wendy Stevens
Journal:  J Virol Methods       Date:  2005-05       Impact factor: 2.014

5.  Improved conditions for extraction and amplification of human immunodeficiency virus type 1 RNA from plasma samples with low viral load.

Authors:  M L Villahermosa; M Thomson; E Vázquez de Parga; M T Cuevas; G Contreras; L Pérez-Alvarez; E Delgado; N Manjón; L Medrano; R Nájera
Journal:  J Hum Virol       Date:  2000 Jan-Feb

6.  Identification of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure.

Authors:  Elena Delgado; Michael M Thomson; María Luisa Villahermosa; María Sierra; Antonio Ocampo; Celia Miralles; Raúl Rodríguez-Pérez; Julio Diz-Aren; Rafael Ojea-de Castro; Elena Losada; María Teresa Cuevas; Elena Vázquez-de Parga; Rocío Carmona; Lucía Pérez-Alvarez; Leandro Medrano; Laureano Cuevas; José Antonio Taboada; Rafael Nájera
Journal:  J Acquir Immune Defic Syndr       Date:  2002-04-15       Impact factor: 3.731

7.  Rapid and sensitive oligonucleotide ligation assay for detection of mutations in human immunodeficiency virus type 1 associated with high-level resistance to protease inhibitors.

Authors:  Ingrid A Beck; Madhumita Mahalanabis; Gregory Pepper; Amy Wright; Shannon Hamilton; Erika Langston; Lisa M Frenkel
Journal:  J Clin Microbiol       Date:  2002-04       Impact factor: 5.948

8.  High incidence of non-B and recombinant HIV-1 strains in newly diagnosed patients in Galicia, Spain: study of genotypic resistance.

Authors:  Lucía Pérez-Alvarez; Rocío Carmona; Mercedes Muñoz; Elena Delgado; Michael M Thomson; Gerardo Contreras; José D Pedreira; Rafael Rodríguez Real; Elena Vázquez de Parga; Leandro Medrano; José Antonio Taboada; Rafael Nájera
Journal:  Antivir Ther       Date:  2003-08

9.  PCR-oligonucleotide ligation assay for detection of point mutations associated with quinolone resistance in Streptococcus pneumoniae.

Authors:  Mai-Ha Bui; Gregory G Stone; Angela M Nilius; Laurel Almer; Robert K Flamm
Journal:  Antimicrob Agents Chemother       Date:  2003-04       Impact factor: 5.191

10.  Oligonucleotide ligation assay-based DNA chip for multiplex detection of single nucleotide polymorphism.

Authors:  Jiao-Yu Deng; Xian-En Zhang; Yuan Mang; Zhi-Ping Zhang; Ya-Feng Zhou; Qiang Liu; Hong-Bing Lu; Zhi-Jun Fu
Journal:  Biosens Bioelectron       Date:  2004-05-15       Impact factor: 10.618

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  4 in total

1.  Transmitted HIV resistance to first-line antiretroviral therapy in Lima, Peru.

Authors:  Jaime Soria; Marta Bull; Caroline Mitchell; Alberto La Rosa; Sandra Dross; Kelli Kraft; Robert Coombs; Eduardo Ticona; Lisa Frenkel
Journal:  AIDS Res Hum Retroviruses       Date:  2011-08-05       Impact factor: 2.205

2.  Evaluation of two human immunodeficiency virus-1 genotyping systems: ViroSeq 2.0 and an in-house method.

Authors:  S Saravanan; M Vidya; P Balakrishnan; P Balakrishanan; N Kumarasamy; Sunil S Solomon; S Solomon; Rami Kantor; David Katzenstein; Bharat Ramratnam; Kenneth H Mayer
Journal:  J Virol Methods       Date:  2009-04-02       Impact factor: 2.014

3.  Optimization of the oligonucleotide ligation assay, a rapid and inexpensive test for detection of HIV-1 drug resistance mutations, for non-North American variants.

Authors:  Ingrid A Beck; Claudia Crowell; Robin Kittoe; Helba Bredell; Molefe Machaba; Carolyn Willamson; Wouter Janssens; Sabelle Jallow; Guido van der Groen; Yiming Shao; Mini Jacob; N M Samuel; Ivette Lorenzana de Rivera; Nicole Ngo-Giang-Huong; Sharon Cassol; George Alemnji; Lisa M Frenkel
Journal:  J Acquir Immune Defic Syndr       Date:  2008-08-01       Impact factor: 3.731

4.  Development and evaluation of an oligonucleotide ligation assay for detection of drug resistance-associated mutations in the human immunodeficiency virus type 2 pol gene.

Authors:  Sabelle Jallow; Steve Kaye; Martin Schutten; Eleonor Brandin; Jan Albert; Samuel J McConkey; Tumani Corrah; Hilton Whittle; Guido Vanham; Sarah Rowland-Jones; Wouter Janssens
Journal:  J Clin Microbiol       Date:  2007-02-28       Impact factor: 5.948

  4 in total

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