Literature DB >> 16204564

Engineering Candida tenuis Xylose reductase for improved utilization of NADH: antagonistic effects of multiple side chain replacements and performance of site-directed mutants under simulated in vivo conditions.

Barbara Petschacher1, Bernd Nidetzky.   

Abstract

Six single- and multiple-site variants of Candida tenuis xylose reductase that were engineered to have side chain replacements in the coenzyme 2'-phosphate binding pocket were tested for NADPH versus NADH selectivity (R(sel)) in the presence of physiological reactant concentrations. The experimental R(sel) values agreed well with predictions from a kinetic mechanism describing mixed alternative coenzyme utilization. The Lys-274-->Arg and Arg-280-->His substitutions, which individually improved wild-type R(sel) 50- and 20-fold, respectively, had opposing structural effects when they were combined in a double mutant.

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Year:  2005        PMID: 16204564      PMCID: PMC1265968          DOI: 10.1128/AEM.71.10.6390-6393.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

Review 1.  Metabolic engineering of Saccharomyces cerevisiae for xylose utilization.

Authors:  B Hahn-Hägerdal; C F Wahlbom; M Gárdonyi; W H van Zyl; R R Cordero Otero; L J Jönsson
Journal:  Adv Biochem Eng Biotechnol       Date:  2001       Impact factor: 2.635

2.  A simple method for site-directed mutagenesis using the polymerase chain reaction.

Authors:  A Hemsley; N Arnheim; M D Toney; G Cortopassi; D J Galas
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

3.  Control of xylose consumption by xylose transport in recombinant Saccharomyces cerevisiae.

Authors:  Márk Gárdonyi; Marie Jeppsson; Gunnar Lidén; Marie F Gorwa-Grauslund; Bärbel Hahn-Hägerdal
Journal:  Biotechnol Bioeng       Date:  2003-06-30       Impact factor: 4.530

4.  Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation.

Authors:  Marko Kuyper; Miranda M P Hartog; Maurice J Toirkens; Marinka J H Almering; Aaron A Winkler; Johannes P van Dijken; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2005-02       Impact factor: 2.796

5.  The coenzyme specificity of Candida tenuis xylose reductase (AKR2B5) explored by site-directed mutagenesis and X-ray crystallography.

Authors:  Barbara Petschacher; Stefan Leitgeb; Kathryn L Kavanagh; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2005-01-01       Impact factor: 3.857

6.  High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae?

Authors:  Marko Kuyper; Harry R Harhangi; Ann Kristin Stave; Aaron A Winkler; Mike S M Jetten; Wim T A M de Laat; Jan J J den Ridder; Huub J M Op den Camp; Johannes P van Dijken; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2003-10       Impact factor: 2.796

7.  Metabolic engineering of a phosphoketolase pathway for pentose catabolism in Saccharomyces cerevisiae.

Authors:  Marco Sonderegger; Michael Schümperli; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

8.  Engineering redox cofactor regeneration for improved pentose fermentation in Saccharomyces cerevisiae.

Authors:  Ritva Verho; John Londesborough; Merja Penttilä; Peter Richard
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

9.  Amino acid substitutions in the yeast Pichia stipitis xylitol dehydrogenase coenzyme-binding domain affect the coenzyme specificity.

Authors:  M H Metzger; C P Hollenberg
Journal:  Eur J Biochem       Date:  1995-02-15

10.  Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle.

Authors:  Marko Kuyper; Aaron A Winkler; Johannes P van Dijken; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2004-03       Impact factor: 2.796

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  11 in total

1.  Computational design of Candida boidinii xylose reductase for altered cofactor specificity.

Authors:  George A Khoury; Hossein Fazelinia; Jonathan W Chin; Robert J Pantazes; Patrick C Cirino; Costas D Maranas
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

Review 2.  Genetic improvement of native xylose-fermenting yeasts for ethanol production.

Authors:  Nicole K Harner; Xin Wen; Paramjit K Bajwa; Glen D Austin; Chi-Yip Ho; Marc B Habash; Jack T Trevors; Hung Lee
Journal:  J Ind Microbiol Biotechnol       Date:  2014-11-18       Impact factor: 3.346

3.  Limitations in xylose-fermenting Saccharomyces cerevisiae, made evident through comprehensive metabolite profiling and thermodynamic analysis.

Authors:  Mario Klimacek; Stefan Krahulec; Uwe Sauer; Bernd Nidetzky
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

4.  Fermentation of mixed glucose-xylose substrates by engineered strains of Saccharomyces cerevisiae: role of the coenzyme specificity of xylose reductase, and effect of glucose on xylose utilization.

Authors:  Stefan Krahulec; Barbara Petschacher; Michael Wallner; Karin Longus; Mario Klimacek; Bernd Nidetzky
Journal:  Microb Cell Fact       Date:  2010-03-10       Impact factor: 5.328

5.  Xylose reductase from the thermophilic fungus Talaromyces emersonii: cloning and heterologous expression of the native gene (Texr) and a double mutant (TexrK271R + N273D) with altered coenzyme specificity.

Authors:  Sara Fernandes; Maria G Tuohy; Patrick G Murray
Journal:  J Biosci       Date:  2009-12       Impact factor: 1.826

6.  Analysis and prediction of the physiological effects of altered coenzyme specificity in xylose reductase and xylitol dehydrogenase during xylose fermentation by Saccharomyces cerevisiae.

Authors:  Stefan Krahulec; Mario Klimacek; Bernd Nidetzky
Journal:  J Biotechnol       Date:  2011-08-25       Impact factor: 3.307

Review 7.  Recent advances in rational approaches for enzyme engineering.

Authors:  Kerstin Steiner; Helmut Schwab
Journal:  Comput Struct Biotechnol J       Date:  2012-10-22       Impact factor: 7.271

8.  Metabolic engineering and classical selection of the methylotrophic thermotolerant yeast Hansenula polymorpha for improvement of high-temperature xylose alcoholic fermentation.

Authors:  Olena O Kurylenko; Justyna Ruchala; Orest B Hryniv; Charles A Abbas; Kostyantyn V Dmytruk; Andriy A Sibirny
Journal:  Microb Cell Fact       Date:  2014-08-20       Impact factor: 5.328

9.  Altering coenzyme specificity of Pichia stipitis xylose reductase by the semi-rational approach CASTing.

Authors:  Ling Liang; Jingqing Zhang; Zhanglin Lin
Journal:  Microb Cell Fact       Date:  2007-11-21       Impact factor: 5.328

10.  Altering the coenzyme preference of xylose reductase to favor utilization of NADH enhances ethanol yield from xylose in a metabolically engineered strain of Saccharomyces cerevisiae.

Authors:  Barbara Petschacher; Bernd Nidetzky
Journal:  Microb Cell Fact       Date:  2008-03-17       Impact factor: 5.328

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