Literature DB >> 16188223

Structural and mutational studies of organophosphorus hydrolase reveal a cryptic and functional allosteric-binding site.

Janet K Grimsley1, Barbara Calamini, James R Wild, Andrew D Mesecar.   

Abstract

Organophosphorus hydrolase detoxifies a broad range of organophosphate pesticides and the chemical warfare agents (CWAs) sarin and VX. Previously, rational genetic engineering produced OPH variants with 30-fold enhancements in the hydrolysis of CWA and their analogs. One interesting variant (H254R) in which the histidine at position 254 was changed to an arginine showed a 4-fold increase in the hydrolysis of demetonS (VX analog), a 14-fold decrease with paraoxon (an insecticide), and a 183-fold decrease with DFP (sarin analog). The three-dimensional structure of this enzyme at 1.9A resolution with the inhibitor, diethyl 4-methylbenzylphosphonate (EBP), revealed that the inhibitor did not bind at the active site, but bound exclusively into a well-defined surface pocket 12 A away from the active site. This structural feature was accompanied by non-competitive inhibition of paraoxon hydrolysis by EBP with H254R, in contrast to the native enzyme, which showed competitive inhibition. These parallel structure-function characteristics identify a functional, allosteric site on the surface of this enzyme.

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Year:  2005        PMID: 16188223     DOI: 10.1016/j.abb.2005.08.012

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  13 in total

1.  Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites.

Authors:  Gregory R Bowman; Phillip L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

2.  Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme.

Authors:  Nobuhiko Tokuriki; Colin J Jackson; Livnat Afriat-Jurnou; Kirsten T Wyganowski; Renmei Tang; Dan S Tawfik
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

3.  Monitoring of diisopropyl fluorophosphate hydrolysis by fluoride-selective polymeric films using absorbance spectroscopy.

Authors:  Madhumati Ramanathan; Lin Wang; James R Wild; Mark E Meyerhoff; Mark E Meyeroff; Aleksandr L Simonian
Journal:  Anal Chim Acta       Date:  2010-04-10       Impact factor: 6.558

4.  Crystal structures of human carboxylesterase 1 in covalent complexes with the chemical warfare agents soman and tabun.

Authors:  Christopher D Fleming; Carol C Edwards; Stephen D Kirby; Donald M Maxwell; Philip M Potter; Douglas M Cerasoli; Matthew R Redinbo
Journal:  Biochemistry       Date:  2007-04-04       Impact factor: 3.162

5.  Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.

Authors:  C J Jackson; J-L Foo; N Tokuriki; L Afriat; P D Carr; H-K Kim; G Schenk; D S Tawfik; D L Ollis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

6.  Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase.

Authors:  Xin Zhang; Ruibo Wu; Lingchun Song; Yuchun Lin; Menghai Lin; Zexing Cao; Wei Wu; Yirong Mo
Journal:  J Comput Chem       Date:  2009-11-30       Impact factor: 3.376

7.  Nerve agent analogues that produce authentic soman, sarin, tabun, and cyclohexyl methylphosphonate-modified human butyrylcholinesterase.

Authors:  Cynthia Gilley; Mary MacDonald; Florian Nachon; Lawrence M Schopfer; Jun Zhang; John R Cashman; Oksana Lockridge
Journal:  Chem Res Toxicol       Date:  2009-10       Impact factor: 3.739

8.  Comparative investigation of the reaction mechanisms of the organophosphate-degrading phosphotriesterases from Agrobacterium radiobacter (OpdA) and Pseudomonas diminuta (OPH).

Authors:  Marcelo M Pedroso; Fernanda Ely; Nataša Mitić; Margaret C Carpenter; Lawrence R Gahan; Dean E Wilcox; James L Larrabee; David L Ollis; Gerhard Schenk
Journal:  J Biol Inorg Chem       Date:  2014-08-08       Impact factor: 3.358

Review 9.  Enhancing organophosphate hydrolase efficacy via protein engineering and immobilization strategies.

Authors:  Priya Katyal; Stanley Chu; Jin Kim Montclare
Journal:  Ann N Y Acad Sci       Date:  2020-08-19       Impact factor: 5.691

10.  Computational study on substrate specificity of a novel cysteine protease 1 precursor from Zea mays.

Authors:  Huimin Liu; Liangcheng Chen; Quan Li; Mingzhu Zheng; Jingsheng Liu
Journal:  Int J Mol Sci       Date:  2014-06-11       Impact factor: 5.923

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