Literature DB >> 16172398

A conserved trimerization motif controls the topology of short coiled coils.

Richard A Kammerer1, Dirk Kostrewa, Pavlos Progias, Srinivas Honnappa, David Avila, Ariel Lustig, Fritz K Winkler, Jean Pieters, Michel O Steinmetz.   

Abstract

In recent years, short coiled coils have been used for applications ranging from biomaterial to medical sciences. For many of these applications knowledge of the factors that control the topology of the engineered protein systems is essential. Here, we demonstrate that trimerization of short coiled coils is determined by a distinct structural motif that encompasses specific networks of surface salt bridges and optimal hydrophobic packing interactions. The motif is conserved among intracellular, extracellular, viral, and synthetic proteins and defines a universal molecular determinant for trimer formation of short coiled coils. In addition to being of particular interest for the biotechnological production of candidate therapeutic proteins, these findings may be of interest for viral drug development strategies.

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Year:  2005        PMID: 16172398      PMCID: PMC1236532          DOI: 10.1073/pnas.0502390102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

Authors:  J Walshaw; D N Woolfson
Journal:  J Mol Biol       Date:  2001-04-13       Impact factor: 5.469

2.  Design of a minimal protein oligomerization domain by a structural approach.

Authors:  P Burkhard; M Meier; A Lustig
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

3.  Molecular applications of fusions to leucine zippers.

Authors:  J D Rieker; J C Hu
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

4.  Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

Authors:  B Tripet; K Wagschal; P Lavigne; C T Mant; R S Hodges
Journal:  J Mol Biol       Date:  2000-07-07       Impact factor: 5.469

5.  The trimer-of-hairpins motif in membrane fusion: Visna virus.

Authors:  V N Malashkevich; M Singh; P S Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

6.  Design of potent inhibitors of HIV-1 entry from the gp41 N-peptide region.

Authors:  D M Eckert; P S Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

7.  Helix-stabilized Fv (hsFv) antibody fragments: substituting the constant domains of a Fab fragment for a heterodimeric coiled-coil domain.

Authors:  K M Arndt; K M Müller; A Plückthun
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

8.  Association of the leukocyte plasma membrane with the actin cytoskeleton through coiled coil-mediated trimeric coronin 1 molecules.

Authors:  John Gatfield; Imke Albrecht; Bettina Zanolari; Michel O Steinmetz; Jean Pieters
Journal:  Mol Biol Cell       Date:  2005-03-30       Impact factor: 4.138

9.  Buried polar residues in coiled-coil interfaces.

Authors:  D L Akey; V N Malashkevich; P S Kim
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

10.  Structure-function analysis of the heat shock factor-binding protein reveals a protein composed solely of a highly conserved and dynamic coiled-coil trimerization domain.

Authors:  Li-Jung Tai; Sally M McFall; Kai Huang; Borries Demeler; Sue G Fox; Kurt Brubaker; Ishwar Radhakrishnan; Richard I Morimoto
Journal:  J Biol Chem       Date:  2001-10-25       Impact factor: 5.486

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  41 in total

1.  Molecular basis of coiled-coil oligomerization-state specificity.

Authors:  Barbara Ciani; Saša Bjelic; Srinivas Honnappa; Hatim Jawhari; Rolf Jaussi; Aishwarya Payapilly; Thomas Jowitt; Michel O Steinmetz; Richard A Kammerer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

2.  SNARE tagging allows stepwise assembly of a multimodular medicinal toxin.

Authors:  Frédéric Darios; Dhevahi Niranjan; Enrico Ferrari; Fan Zhang; Mikhail Soloviev; Andreas Rummel; Hans Bigalke; Jason Suckling; Yuri Ushkaryov; Nikolay Naumenko; Anastasia Shakirzyanova; Rashid Giniatullin; Elizabeth Maywood; Michael Hastings; Thomas Binz; Bazbek Davletov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Molecular basis of coiled-coil formation.

Authors:  Michel O Steinmetz; Ilian Jelesarov; William M Matousek; Srinivas Honnappa; Wolfgang Jahnke; John H Missimer; Sabine Frank; Andrei T Alexandrescu; Richard A Kammerer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

4.  Configurational entropy elucidates the role of salt-bridge networks in protein thermostability.

Authors:  John H Missimer; Michel O Steinmetz; Riccardo Baron; Fritz K Winkler; Richard A Kammerer; Xavier Daura; Wilfred F van Gunsteren
Journal:  Protein Sci       Date:  2007-07       Impact factor: 6.725

Review 5.  On guard: coronin proteins in innate and adaptive immunity.

Authors:  Jean Pieters; Philipp Müller; Rajesh Jayachandran
Journal:  Nat Rev Immunol       Date:  2013-06-14       Impact factor: 53.106

Review 6.  Structural specificity in coiled-coil interactions.

Authors:  Gevorg Grigoryan; Amy E Keating
Journal:  Curr Opin Struct Biol       Date:  2008-06-12       Impact factor: 6.809

7.  Simultaneous prediction of protein folding and docking at high resolution.

Authors:  Rhiju Das; Ingemar André; Yang Shen; Yibing Wu; Alexander Lemak; Sonal Bansal; Cheryl H Arrowsmith; Thomas Szyperski; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-28       Impact factor: 11.205

8.  Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition.

Authors:  Elena Khazina; Vincent Truffault; Regina Büttner; Steffen Schmidt; Murray Coles; Oliver Weichenrieder
Journal:  Nat Struct Mol Biol       Date:  2011-08-07       Impact factor: 15.369

Review 9.  The expanding spectrum of human coronin 1A deficiency.

Authors:  Despina Moshous; Jean-Pierre de Villartay
Journal:  Curr Allergy Asthma Rep       Date:  2014-12       Impact factor: 4.806

10.  CC+: a relational database of coiled-coil structures.

Authors:  Oliver D Testa; Efrosini Moutevelis; Derek N Woolfson
Journal:  Nucleic Acids Res       Date:  2008-10-08       Impact factor: 16.971

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