Literature DB >> 16171383

Ultrahigh resolution structures of nitrophorin 4: heme distortion in ferrous CO and NO complexes.

Estelle M Maes1, Sue A Roberts, Andrzej Weichsel, William R Montfort.   

Abstract

Nitrophorin 4 (NP4), a nitric oxide (NO)-transport protein from the blood-sucking insect Rhodnius prolixus, uses a ferric (Fe3+) heme to deliver NO to its victims. NO binding to NP4 induces a large conformational change and complete desolvation of the distal pocket. The heme is markedly nonplanar, displaying a ruffling distortion postulated to contribute to stabilization of the ferric iron. Here, we report the ferrous (Fe2+) complexes of NP4 with NO, CO, and H2O formed after chemical reduction of the protein and the characterization of these complexes by absorption spectroscopy, flash photolysis, and ultrahigh-resolution crystallography (resolutions vary from 0.9 to 1.08 A). The absorption spectra, both in solution and in the crystal, are typical for six-coordinated ferrous complexes. Closure and desolvation of the distal pocket occurs upon binding CO or NO to the iron regardless of the heme oxidation state, confirming that the conformational change is driven by distal ligand polarity. The degree of heme ruffling is coupled to the nature of the ligand and the iron oxidation state in the following order: (Fe3+)-NO > (Fe2+)-NO > (Fe2+)-CO > (Fe3+)-H2O > (Fe2+)-H2O. The ferrous coordination geometry is as expected, except for the proximal histidine bond, which is shorter than typically found in model compounds. These data are consistent with heme ruffling and coordination geometry serving to stabilize the ferric state of the nitrophorins, a requirement for their physiological function. Possible roles for heme distortion and NO bending in heme protein function are discussed.

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Year:  2005        PMID: 16171383     DOI: 10.1021/bi0506573

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Oxidation and loss of heme in soluble guanylyl cyclase from Manduca sexta.

Authors:  Bradley G Fritz; Xiaohui Hu; Jacqueline L Brailey; Robert E Berry; F Ann Walker; William R Montfort
Journal:  Biochemistry       Date:  2011-06-10       Impact factor: 3.162

2.  Functional modulation of a protein folding landscape via side-chain distortion.

Authors:  Brian A Kelch; Neema L Salimi; David A Agard
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-25       Impact factor: 11.205

3.  Effect of the N-terminus on heme cavity structure, ligand equilibrium, rate constants, and reduction potentials of nitrophorin 2 from Rhodnius prolixus.

Authors:  Robert E Berry; Tatiana Kh Shokhireva; Igor Filippov; Maxim N Shokhirev; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2007-05-17       Impact factor: 3.162

4.  Protein dynamics of a beta-sheet protein.

Authors:  Marius Schmidt; Klaus Achterhold; Valeriy Prusakov; Fritz G Parak
Journal:  Eur Biophys J       Date:  2009-03-07       Impact factor: 1.733

5.  NMR studies of the dynamics of nitrophorin 2 bound to nitric oxide.

Authors:  Dhanasekaran Muthu; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

6.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

7.  Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Authors:  Tatiana K Shokhireva; Nikolai V Shokhirev; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

8.  Influence of heme c attachment on heme conformation and potential.

Authors:  Jesse G Kleingardner; Benjamin D Levin; Giorgio Zoppellaro; K Kristoffer Andersson; Sean J Elliott; Kara L Bren
Journal:  J Biol Inorg Chem       Date:  2018-08-24       Impact factor: 3.358

9.  NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Allena M Goren; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

10.  1H and 13C NMR spectroscopic studies of the ferriheme resonances of three low-spin complexes of wild-type nitrophorin 2 and nitrophorin 2(V24E) as a function of pH.

Authors:  Fei Yang; Markus Knipp; Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2009-06-11       Impact factor: 3.358

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