Literature DB >> 16169747

In vitro expression and characterization of native apomyoglobin under low molecular crowding conditions.

Courtney K Bakke1, Lisa M Jungbauer, Silvia Cavagnero.   

Abstract

The labile nature of membranes and organelles poses serious challenges to in situ biomolecule characterization in intact cells. Cell-free in vitro systems provide an alternative promising medium for the expression and characterization of protein conformation and function in a biochemical context that bears several similarities to the cellular environment. In addition, cell-free transcription-translation has recently emerged as a convenient method for protein selective isotope labeling, providing significant advantages for detailed NMR analysis. We report the cell-free expression of the model protein apomyoglobin (apoMb) in an Escherichia coli cell-free system and the effect of polyethylene glycol (PEG) on the expression yields. In contrast with in vivo protein production under control of the strong T7 promoter, apoMb is expressed in vitro in 100% soluble form. In-gel tryptic digestion followed by mass spectrometry were performed to confirm the protein identity. In order to probe the conformation of the newly expressed protein and investigate the feasibility of in situ structural analysis, high resolution protein characterization was carried out by 2D NMR spectroscopy. In vitro apoMb expression in a PEG-free environment is a convenient method for the production of soluble native-like protein under conditions amenable to selective isotopic labeling. Yields can be easily scaled-up by dialysis-assisted cell-free expression.

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Year:  2005        PMID: 16169747     DOI: 10.1016/j.pep.2005.08.001

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  9 in total

1.  Fluorescence-based analysis of aminoacyl- and peptidyl-tRNA by low-pH sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

Authors:  Robert N Kirchdoerfer; Joseph J-T Huang; Molly K Isola; Silvia Cavagnero
Journal:  Anal Biochem       Date:  2007-01-19       Impact factor: 3.365

2.  Macromolecular crowding effects on transcription and translation are regulated by free magnesium ion.

Authors:  Xumeng Ge; Jianfeng Xu
Journal:  Biotechnol Appl Biochem       Date:  2019-10-15       Impact factor: 2.431

3.  1H-Detected 13C photo-CIDNP as a sensitivity enhancement tool in solution NMR.

Authors:  Jung Ho Lee; Ashok Sekhar; Silvia Cavagnero
Journal:  J Am Chem Soc       Date:  2011-05-06       Impact factor: 15.419

4.  Selective Isotope Labeling and LC-Photo-CIDNP Enable NMR Spectroscopy at Low-Nanomolar Concentration.

Authors:  Hanming Yang; Siyu Li; Clayton A Mickles; Valeria Guzman-Luna; Kenji Sugisaki; Clayton M Thompson; Hung H Dang; Silvia Cavagnero
Journal:  J Am Chem Soc       Date:  2022-06-14       Impact factor: 16.383

5.  Chain dynamics of nascent polypeptides emerging from the ribosome.

Authors:  Jamie P Ellis; Courtney K Bakke; Robert N Kirchdoerfer; Lisa M Jungbauer; Silvia Cavagnero
Journal:  ACS Chem Biol       Date:  2008-08-22       Impact factor: 5.100

6.  Fluorescence Anisotropy Decays and Microscale-Volume Viscometry Reveal the Compaction of Ribosome-Bound Nascent Proteins.

Authors:  Rachel B Hutchinson; Xi Chen; Ningkun Zhou; Silvia Cavagnero
Journal:  J Phys Chem B       Date:  2021-06-10       Impact factor: 2.991

7.  Cell-free protein expression under macromolecular crowding conditions.

Authors:  Xumeng Ge; Dan Luo; Jianfeng Xu
Journal:  PLoS One       Date:  2011-12-08       Impact factor: 3.240

8.  Implications of macromolecular crowding and reducing conditions for in vitro ribosome construction.

Authors:  Brian R Fritz; Osman K Jamil; Michael C Jewett
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

9.  Key reaction components affect the kinetics and performance robustness of cell-free protein synthesis reactions.

Authors:  Alice M Banks; Colette J Whitfield; Steven R Brown; David A Fulton; Sarah A Goodchild; Christopher Grant; John Love; Dennis W Lendrem; Jonathan E Fieldsend; Thomas P Howard
Journal:  Comput Struct Biotechnol J       Date:  2021-12-13       Impact factor: 7.271

  9 in total

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