Literature DB >> 16165119

Pyrosequencing: history, biochemistry and future.

Afshin Ahmadian1, Maria Ehn, Sophia Hober.   

Abstract

BACKGROUND: Pyrosequencing is a DNA sequencing technology based on the sequencing-by-synthesis principle.
METHODS: The technique is built on a 4-enzyme real-time monitoring of DNA synthesis by bioluminescence using a cascade that upon nucleotide incorporation ends in a detectable light signal (bioluminescence). The detection system is based on the pyrophosphate released when a nucleotide is introduced in the DNA-strand. Thereby, the signal can be quantitatively connected to the number of bases added. Currently, the technique is limited to analysis of short DNA sequences exemplified by single-nucleotide polymorphism analysis and genotyping. Mutation detection and single-nucleotide polymorphism genotyping require screening of large samples of materials and therefore the importance of high-throughput DNA analysis techniques is significant. In order to expand the field for pyrosequencing, the read length needs to be improved.
CONCLUSIONS: Th pyrosequencing system is based on an enzymatic system. There are different current and future applications of this technique.

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Year:  2005        PMID: 16165119     DOI: 10.1016/j.cccn.2005.04.038

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  78 in total

1.  GenoType MTBDRsl for molecular detection of second-line-drug and ethambutol resistance in Mycobacterium tuberculosis strains and clinical samples.

Authors:  A Lacoma; N García-Sierra; C Prat; J Maldonado; J Ruiz-Manzano; L Haba; P Gavin; S Samper; V Ausina; J Domínguez
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

2.  Molecular markers for detection and differentiation of Plasmodium falciparum and Plasmodium vivax in human blood samples by pyrosequencing.

Authors:  Viraphong Lulitanond; Pewpan M Intapan; Chairat Tantrawatpan; Nipaporn Sankuntaw; Oranuch Sanpool; Penchom Janwan; Wanchai Maleewong
Journal:  J Clin Microbiol       Date:  2012-02-01       Impact factor: 5.948

3.  A virtual pyrogram generator to resolve complex pyrosequencing results.

Authors:  Guoli Chen; Matthew Theodore Olson; Alan O'Neill; Alexis Norris; Katie Beierl; Shuko Harada; Marija Debeljak; Keila Rivera-Roman; Samantha Finley; Amanda Stafford; Christopher David Gocke; Ming-Tseh Lin; James Richard Eshleman
Journal:  J Mol Diagn       Date:  2012-02-10       Impact factor: 5.568

Review 4.  Suppression Subtractive Hybridization Versus Next-Generation Sequencing in Plant Genetic Engineering: Challenges and Perspectives.

Authors:  Mahbod Sahebi; Mohamed M Hanafi; Parisa Azizi; Abdul Hakim; Sadegh Ashkani; Rambod Abiri
Journal:  Mol Biotechnol       Date:  2015-10       Impact factor: 2.695

5.  Single-tube-genotyping of gastric cancer related SNPs by directly using whole blood and paper-dried blood as starting material.

Authors:  Huan Huang; Ying Bu; Guo-Hua Zhou
Journal:  World J Gastroenterol       Date:  2006-06-28       Impact factor: 5.742

6.  Colonization with Helicobacter is concomitant with modified gut microbiota and drastic failure of the immune control of Mycobacterium tuberculosis.

Authors:  L Majlessi; F Sayes; J-F Bureau; A Pawlik; V Michel; G Jouvion; M Huerre; M Severgnini; C Consolandi; C Peano; R Brosch; E Touati; C Leclerc
Journal:  Mucosal Immunol       Date:  2017-02-01       Impact factor: 7.313

7.  Applying rapid genome sequencing technologies to characterize pathogen genomes.

Authors:  Karyn Meltz Steinberg; David T Okou; Michael E Zwick
Journal:  Anal Chem       Date:  2008-02-01       Impact factor: 6.986

8.  Pyrosequencing analysis of the gyrB gene to differentiate bacteria responsible for diarrheal diseases.

Authors:  X-L Hou; Q-Y Cao; H-Y Jia; Z Chen
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2008-03-07       Impact factor: 3.267

9.  Proteolytic cleavage of human chromogranin a containing naturally occurring catestatin variants: differential processing at catestatin region by plasmin.

Authors:  Nilima Biswas; Sucheta M Vaingankar; Manjula Mahata; Madhusudan Das; Jiaur R Gayen; Laurent Taupenot; Justin W Torpey; Daniel T O'Connor; Sushil K Mahata
Journal:  Endocrinology       Date:  2007-11-08       Impact factor: 4.736

10.  Clinical investigation of EGFR mutation detection by pyrosequencing in lung cancer patients.

Authors:  Hee Joung Kim; Seo Young Oh; Wan Seop Kim; Sun Jong Kim; Gwang Ha Yoo; Won Dong Kim; Kye Young Lee
Journal:  Oncol Lett       Date:  2012-10-01       Impact factor: 2.967

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