Literature DB >> 16164338

Efficient transition path sampling for systems with multiple reaction pathways.

L Y Chen1, P L Nash, N J M Horing.   

Abstract

A new algorithm is developed for sampling transition paths and computing reaction rates. To illustrate the use of this method, we study a two-dimensional system that has two reaction pathways: one pathway is straight with a relatively high barrier and the other is roundabout with a lower barrier. The transition rate and the ratio between the numbers of the straight and roundabout transition paths are computed for a wide range of temperatures. Our study shows that the harmonic approximation for fluctuations about the steepest-descent paths is not valid even at relatively low temperatures and, furthermore, that factors related to entropy have to be determined by the global geometry of the potential-energy surface (rather than just the local curvatures alone) for complex reaction systems. It is reasonable to expect that this algorithm is also applicable to higher dimensional systems.

Mesh:

Year:  2005        PMID: 16164338     DOI: 10.1063/1.2013213

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  The "weighted ensemble" path sampling method is statistically exact for a broad class of stochastic processes and binning procedures.

Authors:  Bin W Zhang; David Jasnow; Daniel M Zuckerman
Journal:  J Chem Phys       Date:  2010-02-07       Impact factor: 3.488

  1 in total

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