Literature DB >> 16163343

Genomic perspectives in microbial oceanography.

Edward F DeLong1, David M Karl.   

Abstract

The global ocean is an integrated living system where energy and matter transformations are governed by interdependent physical, chemical and biotic processes. Although the fundamentals of ocean physics and chemistry are well established, comprehensive approaches to describing and interpreting oceanic microbial diversity and processes are only now emerging. In particular, the application of genomics to problems in microbial oceanography is significantly expanding our understanding of marine microbial evolution, metabolism and ecology. Integration of these new genome-enabled insights into the broader framework of ocean science represents one of the great contemporary challenges for microbial oceanographers.

Mesh:

Year:  2005        PMID: 16163343     DOI: 10.1038/nature04157

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  57 in total

1.  Genome sequence of the unclassified marine Gammaproteobacterium BDW918.

Authors:  Suk Min Kim; Sun Ja Cho; Sun Bok Lee
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

Review 2.  Autotrophic carbon fixation in archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; W Hugo Ramos-Vera; Rafael F Say; Jan Zarzycki; Michael Hügler; Birgit E Alber; Georg Fuchs
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

3.  Discovery and characterization of a distinctive exo-1,3/1,4-{beta}-glucanase from the marine bacterium Pseudoalteromonas sp. strain BB1.

Authors:  Yoshio Nakatani; Iain L Lamont; John F Cutfield
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

4.  Thiol-based redox modulation of a cyanobacterial eukaryotic-type serine/threonine kinase required for oxidative stress tolerance.

Authors:  Alejandro Mata-Cabana; Mario García-Domínguez; Francisco J Florencio; Marika Lindahl
Journal:  Antioxid Redox Signal       Date:  2012-06-04       Impact factor: 8.401

5.  Microbial community gene expression in ocean surface waters.

Authors:  Jorge Frias-Lopez; Yanmei Shi; Gene W Tyson; Maureen L Coleman; Stephan C Schuster; Sallie W Chisholm; Edward F Delong
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-03       Impact factor: 11.205

6.  Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances.

Authors:  Ching-Hung Tseng; Pei-Wen Chiang; Fuh-Kwo Shiah; Yi-Lung Chen; Jia-Rong Liou; Ting-Chang Hsu; Suhinthan Maheswararajah; Isaam Saeed; Saman Halgamuge; Sen-Lin Tang
Journal:  ISME J       Date:  2013-07-11       Impact factor: 10.302

7.  Application of molecular techniques to the elucidation of the microbial community structure of antique paintings.

Authors:  Antonio Santos; Alejandro Cerrada; Silvia García; Margarita San Andrés; Concepción Abrusci; Domingo Marquina
Journal:  Microb Ecol       Date:  2009-07-25       Impact factor: 4.552

8.  Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.

Authors:  Annelie Pernthaler; Anne E Dekas; C Titus Brown; Shana K Goffredi; Tsegereda Embaye; Victoria J Orphan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-08       Impact factor: 11.205

9.  Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor.

Authors:  Frank Scheckenbach; Klaus Hausmann; Claudia Wylezich; Markus Weitere; Hartmut Arndt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

10.  Darwinian evolution in the light of genomics.

Authors:  Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2009-02-12       Impact factor: 16.971

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