Literature DB >> 25878038

Small things considered: the small accessory subunits of RNA polymerase in Gram-positive bacteria.

Andy Weiss1, Lindsey N Shaw2.   

Abstract

The DNA-dependent RNA polymerase core enzyme in Gram-positive bacteria consists of seven subunits. Whilst four of them (α2ββ(')) are essential, three smaller subunits, δ, ε and ω (∼9-21.5 kDa), are considered accessory. Both δ and ω have been viewed as integral components of RNAP for several decades; however, ε has only recently been described. Functionally these three small subunits carry out a variety of tasks, imparting important, supportive effects on the transcriptional process of Gram-positive bacteria. While ω is thought to have a wide range of roles, reaching from maintaining structural integrity of RNAP to σ factor recruitment, the only suggested function for ε thus far is in protecting cells from phage infection. The third subunit, δ, has been shown to have distinct influences in maintaining transcriptional specificity, and thus has a key role in cellular fitness. Collectively, all three accessory subunits, although dispensable under laboratory conditions, are often thought to be crucial for proper RNAP function. Herein we provide an overview of the available literature on each subunit, summarizing landmark findings that have deepened our understanding of these proteins and their function, and outline future challenges in understanding the role of these small subunits in the transcriptional process. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  RNA polymerase; RpoE; RpoY; RpoZ; delta subunit; epsilon subunit; omega subunit; transcriptional regulation

Mesh:

Substances:

Year:  2015        PMID: 25878038      PMCID: PMC4498139          DOI: 10.1093/femsre/fuv005

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  109 in total

1.  Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with omega-beta' interaction.

Authors:  Pallavi Ghosh; Chandrashekharan Ramakrishnan; Dipankar Chatterji
Journal:  Biophys Chem       Date:  2003-03-25       Impact factor: 2.352

2.  The Delta subunit of RNA polymerase is required for virulence of Streptococcus agalactiae.

Authors:  Amanda L Jones; Rachel H V Needham; Craig E Rubens
Journal:  Infect Immun       Date:  2003-07       Impact factor: 3.441

3.  Listeria monocytogenes relA and hpt mutants are impaired in surface-attached growth and virulence.

Authors:  Clare M Taylor; Mark Beresford; Harry A S Epton; David C Sigee; Gilbert Shama; Peter W Andrew; Ian S Roberts
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

4.  The rpoZ gene, encoding the RNA polymerase omega subunit, is required for antibiotic production and morphological differentiation in Streptomyces kasugaensis.

Authors:  Ikuo Kojima; Kano Kasuga; Masayuki Kobayashi; Akira Fukasawa; Satoshi Mizuno; Akira Arisawa; Hisayoshi Akagawa
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

5.  kasT gene of Streptomyces kasugaensis M338-M1 encodes a DNA-binding protein which binds to intergenic region of kasU-kasJ in the kasugamycin biosynthesis gene cluster.

Authors:  Souichi Ikeno; Daisuke Aoki; Koji Sato; Masa Hamada; Makoto Hori; Kayoko S Tsuchiya
Journal:  J Antibiot (Tokyo)       Date:  2002-12       Impact factor: 2.649

6.  The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans.

Authors:  A Sola-Landa; R S Moura; J F Martín
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-02       Impact factor: 11.205

7.  The stringent response genes relA and spoT are important for Escherichia coil biofilms under slow-growth conditions.

Authors:  Grant J Balzer; Robert J C McLean
Journal:  Can J Microbiol       Date:  2002-07       Impact factor: 2.419

8.  Control of rRNA expression by small molecules is dynamic and nonredundant.

Authors:  Heath D Murray; David A Schneider; Richard L Gourse
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

9.  Identification of proteins involved in the heat stress response of Bacillus cereus ATCC 14579.

Authors:  Paula M Periago; Willem van Schaik; Tjakko Abee; Jeroen A Wouters
Journal:  Appl Environ Microbiol       Date:  2002-07       Impact factor: 4.792

Review 10.  The genomics and proteomics of biofilm formation.

Authors:  Karin Sauer
Journal:  Genome Biol       Date:  2003-05-27       Impact factor: 13.583

View more
  16 in total

1.  Solution structure of domain 1.1 of the σA factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.

Authors:  Milan Zachrdla; Petr Padrta; Alžbeta Rabatinová; Hana Šanderová; Ivan Barvík; Libor Krásný; Lukáš Žídek
Journal:  J Biol Chem       Date:  2017-05-24       Impact factor: 5.157

2.  The ω Subunit Governs RNA Polymerase Stability and Transcriptional Specificity in Staphylococcus aureus.

Authors:  Andy Weiss; Brittney D Moore; Miguel H J Tremblay; Dale Chaput; Astrid Kremer; Lindsey N Shaw
Journal:  J Bacteriol       Date:  2016-12-28       Impact factor: 3.490

3.  The torpedo effect in Bacillus subtilis: RNase J1 resolves stalled transcription complexes.

Authors:  Michaela Šiková; Jana Wiedermannová; Martin Převorovský; Ivan Barvík; Petra Sudzinová; Olga Kofroňová; Oldřich Benada; Hana Šanderová; Ciarán Condon; Libor Krásný
Journal:  EMBO J       Date:  2019-12-16       Impact factor: 11.598

4.  Influence of Flexible "ω" on the Activity of E. coli RNA Polymerase: A Thermodynamic Analysis.

Authors:  Debipreeta Bhowmik; Neerupma Bhardwaj; Dipankar Chatterji
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

5.  Structural basis of transcription activation by the global regulator Spx.

Authors:  Jing Shi; Fangfang Li; Aijia Wen; Libing Yu; Lu Wang; Fulin Wang; Yuanling Jin; Sha Jin; Yu Feng; Wei Lin
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

Review 6.  RNA polymerases from low G+C gram-positive bacteria.

Authors:  Michael Miller; Aaron J Oakley; Peter J Lewis
Journal:  Transcription       Date:  2021-08-17

7.  Experimental Evolution of Bacillus subtilis Reveals the Evolutionary Dynamics of Horizontal Gene Transfer and Suggests Adaptive and Neutral Effects.

Authors:  Shai Slomka; Itamar Françoise; Gil Hornung; Omer Asraf; Tammy Biniashvili; Yitzhak Pilpel; Orna Dahan
Journal:  Genetics       Date:  2020-08-26       Impact factor: 4.562

8.  A Bacteriophage DNA Mimic Protein Employs a Non-specific Strategy to Inhibit the Bacterial RNA Polymerase.

Authors:  Zhihao Wang; Hongliang Wang; Nancy Mulvenna; Maximo Sanz-Hernandez; Peipei Zhang; Yanqing Li; Jia Ma; Yawen Wang; Steve Matthews; Sivaramesh Wigneshweraraj; Bing Liu
Journal:  Front Microbiol       Date:  2021-06-02       Impact factor: 5.640

9.  Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases.

Authors:  Veronika Raindlová; Martina Janoušková; Michaela Slavíčková; Pavla Perlíková; Soňa Boháčová; Nemanja Milisavljevič; Hana Šanderová; Martin Benda; Ivan Barvík; Libor Krásný; Michal Hocek
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

10.  In-cell architecture of an actively transcribing-translating expressome.

Authors:  Francis J O'Reilly; Liang Xue; Andrea Graziadei; Ludwig Sinn; Swantje Lenz; Dimitry Tegunov; Cedric Blötz; Neil Singh; Wim J H Hagen; Patrick Cramer; Jörg Stülke; Julia Mahamid; Juri Rappsilber
Journal:  Science       Date:  2020-07-31       Impact factor: 47.728

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.