Literature DB >> 16154094

RNA silencing suppressor p21 of Beet yellows virus forms an RNA binding octameric ring structure.

Keqiong Ye1, Dinshaw J Patel.   

Abstract

Many plant viruses encode proteins that suppress the antiviral RNA silencing response mounted by the host. The suppressors p19 from tombusvirus and p21 from Beet yellows virus appear to block silencing by directly binding siRNA, a critical mediator in the process. Here, we report the crystal structure of p21, which reveals an octameric ring architecture with a large central cavity of approximately 90 A diameter. The all alpha-helical p21 monomer consists of N- and C-terminal domains that associate with their neighboring counterparts through symmetric head-to-head and tail-to-tail interactions. A putative RNA binding surface is identified in the conserved, positive-charged inner surface of the ring. In contrast to the specific p19-siRNA duplex interaction, p21 is a general nucleic acid binding protein, interacting with 21 nt or longer single- and double-stranded RNAs in vitro. This study reveals an RNA binding structure adopted by the p21 silencing suppressor.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16154094      PMCID: PMC4689306          DOI: 10.1016/j.str.2005.06.017

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  46 in total

1.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells.

Authors:  S M Hammond; E Bernstein; D Beach; G J Hannon
Journal:  Nature       Date:  2000-03-16       Impact factor: 49.962

2.  Efficient anisotropic refinement of macromolecular structures using FFT.

Authors:  G N Murshudov; A A Vagin; A Lebedev; K S Wilson; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

Review 3.  Mechanisms of gene silencing by double-stranded RNA.

Authors:  Gunter Meister; Thomas Tuschl
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

Review 4.  RNA silencing and antiviral defense in plants.

Authors:  Ming-Bo Wang; Michael Metzlaff
Journal:  Curr Opin Plant Biol       Date:  2005-04       Impact factor: 7.834

Review 5.  Induction and suppression of RNA silencing: insights from viral infections.

Authors:  Olivier Voinnet
Journal:  Nat Rev Genet       Date:  2005-03       Impact factor: 53.242

6.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

7.  Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.

Authors:  Patrice Dunoyer; Charles-Henri Lecellier; Eneida Abreu Parizotto; Christophe Himber; Olivier Voinnet
Journal:  Plant Cell       Date:  2004-04-14       Impact factor: 11.277

8.  Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand.

Authors:  Thirumananseri Kumarevel; Hiroshi Mizuno; Penmetcha K R Kumar
Journal:  Nature       Date:  2005-03-10       Impact factor: 49.962

9.  A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing.

Authors:  K D Kasschau; J C Carrington
Journal:  Cell       Date:  1998-11-13       Impact factor: 41.582

10.  Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses.

Authors:  Lóránt Lakatos; György Szittya; Dániel Silhavy; József Burgyán
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

View more
  20 in total

1.  Genetic diversity and silencing suppression activity of the p22 protein of Tomato chlorosis virus isolates from tomato and sweet pepper.

Authors:  Yazmín M Landeo-Ríos; Jesús Navas-Castillo; Enrique Moriones; M Carmen Cañizares
Journal:  Virus Genes       Date:  2015-09-03       Impact factor: 2.332

Review 2.  Virus counterdefense: diverse strategies for evading the RNA-silencing immunity.

Authors:  Feng Li; Shou-Wei Ding
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

3.  Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors.

Authors:  Lóránt Lakatos; Tibor Csorba; Vitantonio Pantaleo; Elisabeth J Chapman; James C Carrington; Yu-Ping Liu; Valerian V Dolja; Lourdes Fernández Calvino; Juan José López-Moya; József Burgyán
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

4.  DCL4 targets Cucumber mosaic virus satellite RNA at novel secondary structures.

Authors:  Quan-Sheng Du; Cheng-Guo Duan; Zhong-Hui Zhang; Yuan-Yuan Fang; Rong-Xiang Fang; Qi Xie; Hui-Shan Guo
Journal:  J Virol       Date:  2007-07-03       Impact factor: 5.103

Review 5.  Antiviral immunity directed by small RNAs.

Authors:  Shou-Wei Ding; Olivier Voinnet
Journal:  Cell       Date:  2007-08-10       Impact factor: 41.582

6.  Quantitative evaluation of six different viral suppressors of silencing using image analysis of transient GFP expression.

Authors:  Taniya Dhillon; Joseph M Chiera; John A Lindbo; John J Finer
Journal:  Plant Cell Rep       Date:  2009-02-06       Impact factor: 4.570

7.  Transgenic inhibitors of RNA interference in Drosophila.

Authors:  Yu-ting Chou; Bergin Tam; Fabien Linay; Eric C Lai
Journal:  Fly (Austin)       Date:  2007-11-18       Impact factor: 2.160

8.  Molecular characterization and detection of a new closterovirus identified from blackcurrant by high-throughput sequencing.

Authors:  Luping Zheng; Liping Wu; Joseph Postman; Huawei Liu; Ruhui Li
Journal:  Virus Genes       Date:  2018-09-11       Impact factor: 2.332

9.  Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing.

Authors:  Zsuzsanna Mérai; Zoltán Kerényi; Sándor Kertész; Melinda Magna; Lóránt Lakatos; Dániel Silhavy
Journal:  J Virol       Date:  2006-06       Impact factor: 5.103

10.  Protease activity, self interaction, and small interfering RNA binding of the silencing suppressor p1b from cucumber vein yellowing ipomovirus.

Authors:  Adrian Valli; Gabriela Dujovny; Juan Antonio García
Journal:  J Virol       Date:  2007-11-07       Impact factor: 5.103

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.