Literature DB >> 16150722

Complex cardiac Nkx2-5 gene expression activated by noggin-sensitive enhancers followed by chamber-specific modules.

Xuan Chi1, Pradeep K Chatterjee, Willie Wilson, Shu-Xing Zhang, Franco J Demayo, Robert J Schwartz.   

Abstract

We previously reported that an Nkx2-5-GFP bacterial artificial chromosome in transgenic mice recapitulated the endogenous gene activity in the heart. Here, we identified three additional previously uncharacterized distal enhancer modules of Nkx2-5: UH6, which directed transgene expression in the right ventricle, interventricular septum, and atrial ventricular canal; UH5, which directed expression in both atria; and UH4, which directed transgene expression in tongue muscle. Nkx2-5 enhancers drive cardiogenic gene activity from the earliest progenitors to the late-stage embryonic heart, reside within its 27 kb of 5' flanking sequences, organized in a tandem array. Nkx2-5 enhancers involved with stomach-, tongue-, and chamber-restricted expression displayed lacZ transgene activity and chromatin histone acetylation patterns consistent with tissue-specific expression. An examination of Nkx2-5 gene activity in murine embryonic stem cells converted to beating embryoid bodies showed that only the proximal active region 2 and GATA-Smad enhancers were chromatin-remodeled. Chromatin remodeling of active region 2 and GATA-Smad enhancers were blunted by noggin coexpression, which indicated dependence on bone morphogenetic protein signaling for their chromatin activation during activation of Nkx2-5 expression.

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Year:  2005        PMID: 16150722      PMCID: PMC1224629          DOI: 10.1073/pnas.0504295102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  Rapid modification of bacterial artificial chromosomes by ET-recombination.

Authors:  J P Muyrers; Y Zhang; G Testa; A F Stewart
Journal:  Nucleic Acids Res       Date:  1999-03-15       Impact factor: 16.971

2.  Regulation of avian cardiac myogenesis by activin/TGFbeta and bone morphogenetic proteins.

Authors:  A N Ladd; T A Yatskievych; P B Antin
Journal:  Dev Biol       Date:  1998-12-15       Impact factor: 3.582

3.  Congenital heart disease caused by mutations in the transcription factor NKX2-5.

Authors:  J J Schott; D W Benson; C T Basson; W Pease; G M Silberbach; J P Moak; B J Maron; C E Seidman; J G Seidman
Journal:  Science       Date:  1998-07-03       Impact factor: 47.728

Review 4.  Building the heart piece by piece: modularity of cis-elements regulating Nkx2-5 transcription.

Authors:  R J Schwartz; E N Olson
Journal:  Development       Date:  1999-10       Impact factor: 6.868

5.  Complex modular cis-acting elements regulate expression of the cardiac specifying homeobox gene Csx/Nkx2.5.

Authors:  M Tanaka; S B Wechsler; I W Lee; N Yamasaki; J A Lawitts; S Izumo
Journal:  Development       Date:  1999-04       Impact factor: 6.868

6.  The cardiac homeobox gene Csx/Nkx2.5 lies genetically upstream of multiple genes essential for heart development.

Authors:  M Tanaka; Z Chen; S Bartunkova; N Yamasaki; S Izumo
Journal:  Development       Date:  1999-03       Impact factor: 6.868

7.  Identification of upstream regulatory regions in the heart-expressed homeobox gene Nkx2-5.

Authors:  J M Reecy; X Li; M Yamada; F J DeMayo; C S Newman; R P Harvey; R J Schwartz
Journal:  Development       Date:  1999-02       Impact factor: 6.868

8.  The gene tinman is required for specification of the heart and visceral muscles in Drosophila.

Authors:  R Bodmer
Journal:  Development       Date:  1993-07       Impact factor: 6.868

9.  Control of early cardiac-specific transcription of Nkx2-5 by a GATA-dependent enhancer.

Authors:  C L Lien; C Wu; B Mercer; R Webb; J A Richardson; E N Olson
Journal:  Development       Date:  1999-01       Impact factor: 6.868

10.  A GATA-dependent nkx-2.5 regulatory element activates early cardiac gene expression in transgenic mice.

Authors:  R D Searcy; E B Vincent; C M Liberatore; K E Yutzey
Journal:  Development       Date:  1998-11       Impact factor: 6.868

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  13 in total

1.  Expression of podocalyxin separates the hematopoietic and vascular potentials of mouse embryonic stem cell-derived mesoderm.

Authors:  Hailan Zhang; Johnathan L Nieves; Stuart T Fraser; Joan Isern; Panagiotis Douvaras; Dmitri Papatsenko; Sunita L D'Souza; Ihor R Lemischka; Michael A Dyer; Margaret H Baron
Journal:  Stem Cells       Date:  2014-01       Impact factor: 6.277

Review 2.  Enhancer identification through comparative genomics.

Authors:  Axel Visel; James Bristow; Len A Pennacchio
Journal:  Semin Cell Dev Biol       Date:  2007-01-05       Impact factor: 7.727

3.  The Kruppel-like transcription factor KLF13 is a novel regulator of heart development.

Authors:  Geneviève Lavallée; Gregor Andelfinger; Mathieu Nadeau; Chantal Lefebvre; Georges Nemer; Marko E Horb; Mona Nemer
Journal:  EMBO J       Date:  2006-10-19       Impact factor: 11.598

4.  Six2 activity is required for the formation of the mammalian pyloric sphincter.

Authors:  Michelle Self; Xin Geng; Guillermo Oliver
Journal:  Dev Biol       Date:  2009-08-03       Impact factor: 3.582

5.  GATA6 reporter gene reveals myocardial phenotypic heterogeneity that is related to variations in gap junction coupling.

Authors:  Mathieu C Rémond; Grazia Iaffaldano; Michael P O'Quinn; Nadejda V Mezentseva; Victor Garcia; Brett S Harris; Robert G Gourdie; Carol A Eisenberg; Leonard M Eisenberg
Journal:  Am J Physiol Heart Circ Physiol       Date:  2011-09-09       Impact factor: 4.733

6.  Identifying Distal cis-acting Gene-Regulatory Sequences by Expressing BACs Functionalized with loxP-Tn10 Transposons in Zebrafish.

Authors:  Pradeep K Chatterjee; Leighcraft A Shakes; Hope M Wolf; Mohammad A Mujalled; Constance Zhou; Charles Hatcher; Derek C Norford
Journal:  RSC Adv       Date:  2013-06-21       Impact factor: 3.361

Review 7.  Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis.

Authors:  Gabriela G Loots
Journal:  Adv Genet       Date:  2008       Impact factor: 1.944

8.  T-box 2, a mediator of Bmp-Smad signaling, induced hyaluronan synthase 2 and Tgfbeta2 expression and endocardial cushion formation.

Authors:  Manabu Shirai; Kyoko Imanaka-Yoshida; Michael D Schneider; Robert J Schwartz; Takayuki Morisaki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-21       Impact factor: 11.205

9.  Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons.

Authors:  Leighcraft A Shakes; Gembu Abe; Mugtaba A Eltayeb; Hope M Wolf; Koichi Kawakami; Pradeep K Chatterjee
Journal:  BMC Genomics       Date:  2011-07-07       Impact factor: 3.969

10.  Minimal cross-recombination between wild-type and loxP511 sites in vivo facilitates truncating both ends of large DNA inserts in pBACe3.6 and related vectors.

Authors:  Leighcraft A Shakes; Douglas M Garland; Deepak K Srivastava; Ken R Harewood; Pradeep K Chatterjee
Journal:  Nucleic Acids Res       Date:  2005-08-01       Impact factor: 16.971

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