Literature DB >> 16150716

Probing the structure of a rotaxane with two-dimensional infrared spectroscopy.

Olaf F A Larsen1, Pavol Bodis, Wybren Jan Buma, Jeffrey S Hannam, David A Leigh, Sander Woutersen.   

Abstract

Femtosecond 2D-IR spectroscopy has been used to study the structure of a [2]rotaxane composed of a benzylic amide macrocycle that is mechanically interlocked onto a succinamide-based thread. Both the macrocycle and the thread contain carbonyl groups, and by determining the coupling between the stretching modes of these groups from the cross-peaks in the 2D-IR spectrum, the structure of the macrocycle-thread system has been probed. Our results demonstrate that 2D-IR spectroscopy can be used to observe structural changes in molecular devices on a picosecond time scale.

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Year:  2005        PMID： 16150716      PMCID： PMC1198997          DOI： 10.1073/pnas.0505313102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  26 in total

1.  Chemistry. Optical analogs of 2D NMR.

Authors:  David M Jonas
Journal:  Science       Date:  2003-06-06       Impact factor: 47.728

2.  Photoisomerization of a rotaxane hydrogen bonding template: light-induced acceleration of a large amplitude rotational motion.

Authors:  Francesco G Gatti; Salvador León; Jenny K Y Wong; Giovanni Bottari; Andrea Altieri; M Angeles Farran Morales; Simon J Teat; Céline Frochot; David A Leigh; Albert M Brouwer; Francesco Zerbetto
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-27       Impact factor: 11.205

3.  Site-specific vibrational dynamics of the CD3zeta membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy.

Authors:  Prabuddha Mukherjee; Amber T Krummel; Eric C Fulmer; Itamar Kass; Isaiah T Arkin; Martin T Zanni
Journal:  J Chem Phys       Date:  2004-06-01       Impact factor: 3.488

4.  Chemistry. Multidimensional snapshots of chemical dynamics.

Authors:  Albert Stolow; David M Jonas
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

5.  A two-dimensional infrared study of localization, structure, and dynamics of a dipeptide in membrane environment.

Authors:  V Volkov; P Hamm
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

6.  A reversible synthetic rotary molecular motor.

Authors:  José V Hernández; Euan R Kay; David A Leigh
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

7.  Collective oscillations and the linear and two-dimensional infrared spectra of inhomogeneous beta-sheets.

Authors:  Arend G Dijkstra; Jasper Knoester
Journal:  J Phys Chem B       Date:  2005-05-19       Impact factor: 2.991

Review 8.  Infrared and Raman vibrational optical activity: theoretical and experimental aspects.

Authors:  L A Nafie
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

9.  Light-driven monodirectional molecular rotor.

Authors:  N Koumura; R W Zijlstra; R A van Delden; N Harada; B L Feringa
Journal:  Nature       Date:  1999-09-09       Impact factor: 49.962

10.  Dynamics of amide-I modes of the alanine dipeptide in D2O.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2005-04-14       Impact factor: 2.991
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  9 in total

Review 1.  Coherent femtosecond multidimensional probes of molecular vibrations.

Authors:  Shaul Mukamel; Wei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

2.  Two-dimensional vibrational optical probes for peptide fast folding investigation.

Authors:  Wei Zhuang; Darius Abramavicius; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-04       Impact factor: 11.205

3.  Two-dimensional infrared spectra reveal relaxation of the nonnucleoside inhibitor TMC278 complexed with HIV-1 reverse transcriptase.

Authors:  Chong Fang; Joseph D Bauman; Kalyan Das; Amanda Remorino; Eddy Arnold; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-26       Impact factor: 11.205

4.  Simulation protocols for coherent femtosecond vibrational spectra of peptides.

Authors:  Wei Zhuang; Darius Abramavicius; Tomoyuki Hayashi; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2006-02-23       Impact factor: 2.991

5.  Unravelling coherent dynamics and energy dissipation in photosynthetic complexes by 2D spectroscopy.

Authors:  Darius Abramavicius; Dmitri V Voronine; Shaul Mukamel
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

6.  Squaraine rotaxanes with boat conformation macrocycles.

Authors:  Na Fu; Jeffrey M Baumes; Easwaran Arunkumar; Bruce C Noll; Bradley D Smith
Journal:  J Org Chem       Date:  2009-09-04       Impact factor: 4.354

7.  Two-dimensional infrared spectroscopy as a probe of the solvent electrostatic field for a twelve residue peptide.

Authors:  Jianping Wang; Wei Zhuang; Shaul Mukamel; Robin Hochstrasser
Journal:  J Phys Chem B       Date:  2007-12-14       Impact factor: 2.991

Review 8.  Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges.

Authors:  Wei Zhuang; Tomoyuki Hayashi; Shaul Mukamel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Transient two-dimensional vibrational spectroscopy of an operating molecular machine.

Authors:  Matthijs R Panman; Chris N van Dijk; Adriana Huerta-Viga; Hans J Sanders; Bert H Bakker; David A Leigh; Albert M Brouwer; Wybren Jan Buma; Sander Woutersen
Journal:  Nat Commun       Date:  2017-12-20       Impact factor: 14.919
  9 in total

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