Literature DB >> 16144410

NMR assignment methods for the aromatic ring resonances of phenylalanine and tyrosine residues in proteins.

Takuya Torizawa1, Akira Mei Ono, Tsutomu Terauchi, Masatsune Kainosho.   

Abstract

The unambiguous assignment of the aromatic ring resonances in proteins has been severely hampered by the inherently poor sensitivities of the currently available methodologies developed for uniformly 13C/15N-labeled proteins. Especially, the small chemical shift differences between aromatic ring carbons and protons for phenylalanine residues in proteins have prevented the selective observation and unambiguous assignment of each signal. We have solved all of the difficulties due to the tightly coupled spin systems by preparing regio-/stereoselectively 13C/2H/15N-labeled phenylalanine (Phe) and tyrosine (Tyr) to avoid the presence of directly connected 13C-1H pairs in the aromatic rings. The superiority of the new labeling schemes for the assignment of aromatic ring signals is clearly demonstrated for a 17 kDa calcium binding protein, calmodulin.

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Year:  2005        PMID: 16144410     DOI: 10.1021/ja051386m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  4D APSY-HBCB(CG)CDHD experiment for automated assignment of aromatic amino acid side chains in proteins.

Authors:  Barbara Krähenbühl; Sebastian Hiller; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

2.  Alternative SAIL-Trp for robust aromatic signal assignment and determination of the χ(2) conformation by intra-residue NOEs.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; JunGoo Jee; Akira M Ono; Kosuke Okuma; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2011-09-23       Impact factor: 2.835

3.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

4.  Surface proteins and the formation of biofilms by Staphylococcus aureus.

Authors:  Sung Joon Kim; James Chang; Binayak Rimal; Hao Yang; Jacob Schaefer
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-12-09       Impact factor: 3.747

5.  Application of SAIL phenylalanine and tyrosine with alternative isotope-labeling patterns for protein structure determination.

Authors:  Mitsuhiro Takeda; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2009-08-07       Impact factor: 2.835

6.  Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.

Authors:  Frank Löhr; Robert Hänsel; Vladimir V Rogov; Volker Dötsch
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

7.  Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system.

Authors:  Teppei Ikeya; Mitsuhiro Takeda; Hitoshi Yoshida; Tsutomu Terauchi; Jun-Goo Jee; Masatsune Kainosho; Peter Güntert
Journal:  J Biomol NMR       Date:  2009-07-14       Impact factor: 2.835

8.  α-Ketoacids as precursors for phenylalanine and tyrosine labelling in cell-based protein overexpression.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11-22       Impact factor: 2.835

Review 9.  Late metabolic precursors for selective aromatic residue labeling.

Authors:  Julia Schörghuber; Leonhard Geist; Gerald Platzer; Michael Feichtinger; Marilena Bisaccia; Lukas Scheibelberger; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2018-05-28       Impact factor: 2.835

10.  Anthranilic acid, the new player in the ensemble of aromatic residue labeling precursor compounds.

Authors:  Julia Schörghuber; Leonhard Geist; Marilena Bisaccia; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2017-08-31       Impact factor: 2.835

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