Literature DB >> 16132156

Different pathways in mechanical unfolding/folding cycle of a single semiflexible polymer.

N Yoshinaga1, K Yoshikawa, T Ohta.   

Abstract

Kinetics of conformational change of a semiflexible polymer under mechanical external field were investigated with Langevin dynamics simulations. It is found that a semiflexible polymer exhibits large hysteresis in mechanical folding/unfolding cycle even with a slow operation, whereas in a flexible polymer, the hysteresis almost disappears at a sufficiently slow operation. This suggests that the essential features of the structural transition of a semiflexible polymer should be interpreted at least on a two-dimensional phase space. The appearance of such large hysteresis is discussed in relation to different pathways in the loading and unloading processes. By using a minimal two-variable model, the hysteresis loop is described in terms of different pathways on the transition between two stable states.

Entities:  

Year:  2005        PMID: 16132156     DOI: 10.1140/epje/i2005-10023-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  11 in total

1.  Free energy reconstruction from nonequilibrium single-molecule pulling experiments.

Authors:  G Hummer; A Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  Early stages of homopolymer collapse

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-01

3.  Dynamic response of adhesion complexes: beyond the single-path picture.

Authors:  Denis Bartolo; Imre Derényi; Armand Ajdari
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-10

4.  Model of elastic responses of single DNA molecules in collapsing transition.

Authors:  Hirofumi Wada; Yoshihiro Murayama; Masaki Sano
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-12-30

Review 5.  Ten years of tension: single-molecule DNA mechanics.

Authors:  Carlos Bustamante; Zev Bryant; Steven B Smith
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

6.  DNA spools under tension.

Authors:  I M Kulić; H Schiessel
Journal:  Phys Rev Lett       Date:  2004-06-02       Impact factor: 9.161

7.  Monte Carlo simulations of a single polymer chain under extension above and below the Theta temperature.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-01

8.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

9.  Stretching of single collapsed DNA molecules.

Authors:  C G Baumann; V A Bloomfield; S B Smith; C Bustamante; M D Wang; S M Block
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

10.  Force and velocity measured for single kinesin molecules.

Authors:  K Svoboda; S M Block
Journal:  Cell       Date:  1994-06-03       Impact factor: 41.582

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  1 in total

1.  Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations.

Authors:  T R Einert; C E Sing; A Alexander-Katz; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-14       Impact factor: 1.890

  1 in total

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