Literature DB >> 15245260

DNA spools under tension.

I M Kulić1, H Schiessel.   

Abstract

DNA spools, structures in which DNA is wrapped and helically coiled onto itself or onto a protein core, are ubiquitous in nature. We develop a general theory describing the nonequilibrium behavior of DNA spools under linear tension. Two puzzling and seemingly unrelated recent experimental findings, the sudden quantized unwrapping of nucleosomes and that of DNA toroidal condensates under tension, are theoretically explained and shown to be of the same origin. The study provides new insights into nucleosome and chromatin fiber stability and dynamics.

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Year:  2004        PMID: 15245260     DOI: 10.1103/PhysRevLett.92.228101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  36 in total

1.  Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling.

Authors:  Andrey G Cherstvy
Journal:  J Biol Phys       Date:  2011-01-18       Impact factor: 1.365

2.  Dissecting DNA-histone interactions in the nucleosome by molecular dynamics simulations of DNA unwrapping.

Authors:  Ramona Ettig; Nick Kepper; Rene Stehr; Gero Wedemann; Karsten Rippe
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Nucleosome dynamics between tension-induced states.

Authors:  Laleh Mollazadeh-Beidokhti; Farshid Mohammad-Rafiee; Helmut Schiessel
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

4.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

5.  Looping charged elastic rods: applications to protein-induced DNA loop formation.

Authors:  A G Cherstvy
Journal:  Eur Biophys J       Date:  2010-10-21       Impact factor: 1.733

6.  A lattice model for transcription factor access to nucleosomal DNA.

Authors:  Vladimir B Teif; Ramona Ettig; Karsten Rippe
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

7.  Stepwise unfolding of collapsed polymers.

Authors:  D Marenduzzo; A Maritan; A Rosa; F Seno
Journal:  Eur Phys J E Soft Matter       Date:  2004-09       Impact factor: 1.890

8.  Different pathways in mechanical unfolding/folding cycle of a single semiflexible polymer.

Authors:  N Yoshinaga; K Yoshikawa; T Ohta
Journal:  Eur Phys J E Soft Matter       Date:  2005-08-23       Impact factor: 1.890

9.  The nucleosome: a transparent, slippery, sticky and yet stable DNA-protein complex.

Authors:  H Schiessel
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-02       Impact factor: 1.890

10.  Local DNA Sequence Controls Asymmetry of DNA Unwrapping from Nucleosome Core Particles.

Authors:  Alexander W Mauney; Joshua M Tokuda; Lisa M Gloss; Oscar Gonzalez; Lois Pollack
Journal:  Biophys J       Date:  2018-07-31       Impact factor: 4.033

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