Literature DB >> 16129549

Molecular crowding effects of linear polymers in protein solutions.

Donald J Winzor1, Peter R Wills.   

Abstract

Measurement of protein-polymer second virial coefficients (BAP) by sedimentation equilibrium studies of carbonic anhydrase and cytochrome c in the presence of dextrans (T10-T80) has revealed an inverse dependence of BAP upon dextran molecular mass that conforms well with the behaviour predicted for the excluded-volume interaction between a spherical protein solute A and a random-flight representation of the polymeric cosolute P. That model of the protein-polymer interaction is also shown to provide a reasonable description of published gel chromatographic and equilibrium dialysis data on the effect of polymer molecular mass on BAP for human serum albumin in the presence of polyethylene glycols, a contrary finding from analysis of albumin solubility measurements being rejected on theoretical grounds. Inverse dependence upon polymer chainlength is also the predicted excluded-volume effect on the strength of several types of macromolecular equilibria-protein isomerization, protein dimerization, and 1:1 complex formation between dissimilar protein reactants. It is therefore concluded that published experimental observations of the reverse dependence, preferential reaction enhancement within DNA replication complexes by larger polyethylene glycols, must reflect the consequences of cosolute chemical interactions that outweigh those of thermodynamic nonideality arising from excluded-volume effects.

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Year:  2005        PMID: 16129549     DOI: 10.1016/j.bpc.2005.08.001

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  12 in total

1.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Effects of macromolecular crowding on biochemical reaction equilibria: a molecular thermodynamic perspective.

Authors:  Zhongqiao Hu; Jianwen Jiang; Raj Rajagopalan
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

Review 3.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 4.  A Hilly path through the thermodynamics and statistical mechanics of protein solutions.

Authors:  Peter R Wills
Journal:  Biophys Rev       Date:  2016-10-25

Review 5.  Foreword to 'Quantitative and analytical relations in biochemistry'-a special issue in honour of Donald J. Winzor's 80th birthday.

Authors:  Damien Hall; Stephen E Harding
Journal:  Biophys Rev       Date:  2016-11-04

Review 6.  Mineralization and non-ideality: on nature's foundry.

Authors:  Ashit Rao; Helmut Cölfen
Journal:  Biophys Rev       Date:  2016-11-21

7.  Challenge of mimicking the influences of the cellular environment on RNA structure by PEG-induced macromolecular crowding.

Authors:  Jillian Tyrrell; Kevin M Weeks; Gary J Pielak
Journal:  Biochemistry       Date:  2015-10-15       Impact factor: 3.162

8.  Influence of the cosolute environment on IgG solution structure analyzed by small-angle X-ray scattering.

Authors:  Wayne G Lilyestrom; Steven J Shire; Thomas M Scherer
Journal:  J Phys Chem B       Date:  2012-08-03       Impact factor: 2.991

9.  Size-Dependent Interplay of Volume Exclusion Versus Soft Interactions: Cytochrome c in Macromolecular Crowded Environment.

Authors:  Zahoor Ahmad Parray; Faizan Ahmad; Anis Ahmad Chaudhary; Hassan Ahmad Rudayni; Mohammed Al-Zharani; Md Imtaiyaz Hassan; Asimul Islam
Journal:  Front Mol Biosci       Date:  2022-05-25

10.  Modulation of calmodulin plasticity by the effect of macromolecular crowding.

Authors:  Dirar Homouz; Hugo Sanabria; M Neal Waxham; Margaret S Cheung
Journal:  J Mol Biol       Date:  2009-07-03       Impact factor: 5.469

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