Literature DB >> 16128570

Is Arg418 the catalytic base required for the hydrolysis step of the IMP dehydrogenase reaction?

Yollete V Guillén Schlippe1, Lizbeth Hedstrom.   

Abstract

The first committed step of guanine nucleotide biosynthesis is the oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5'-monophosphate (XMP) catalyzed by IMP dehydrogenase. The reaction involves the reduction of NAD(+) with the formation of a covalent enzyme intermediate (E-XMP). Hydrolysis of E-XMP requires the enzyme to adopt a closed conformation and is rate-limiting. Thr321, Arg418, and Tyr419 are candidates for the residue that activates water. The substitution of Thr321 has similar, but small, effects on both the hydride transfer and hydrolysis steps. This result suggests that Thr321 influences the reactivity of Cys319, either through a direct interaction or by stabilizing the structure of the active site loop. The hydrolysis of E-XMP is accelerated by the deprotonation of a residue with a pK(a) of approximately 8. A similar deprotonation stabilizes the closed conformation; this residue has a pK(a) of >or=6 in the closed conformation. The substitution of Tyr419 with Phe does not change the pH dependence of either the hydrolysis of E-XMP or the conformational change, which suggests that Tyr419 is not the residue that activates water. In contrast, the conformational change becomes pH-independent when Arg418 is substituted with Gln. Lys can replace the function of Arg418 in the hydrolysis reaction but does not stabilize the closed conformation. The simplest explanation for these observations is that Arg418 serves as the base that activates water in the IMPDH reaction.

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Year:  2005        PMID: 16128570     DOI: 10.1021/bi048342v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

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2.  Structural determinants of inhibitor selectivity in prokaryotic IMP dehydrogenases.

Authors:  Deviprasad R Gollapalli; Iain S Macpherson; George Liechti; Suresh Kumar Gorla; Joanna B Goldberg; Lizbeth Hedstrom
Journal:  Chem Biol       Date:  2010-10-29

3.  Understanding how the distal environment directs reactivity in chlorite dismutase: spectroscopy and reactivity of Arg183 mutants.

Authors:  Béatrice Blanc; Jeffery A Mayfield; Claudia A McDonald; Gudrun S Lukat-Rodgers; Kenton R Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2012-02-22       Impact factor: 3.162

Review 4.  IMP dehydrogenase: structure, mechanism, and inhibition.

Authors:  Lizbeth Hedstrom
Journal:  Chem Rev       Date:  2009-07       Impact factor: 60.622

5.  Arginine as a general acid catalyst in serine recombinase-mediated DNA cleavage.

Authors:  Ross A Keenholtz; Kent W Mouw; Martin R Boocock; Nan-Sheng Li; Joseph A Piccirilli; Phoebe A Rice
Journal:  J Biol Chem       Date:  2013-08-22       Impact factor: 5.157

Review 6.  Structure and function of HWE/HisKA2-family sensor histidine kinases.

Authors:  Julien Herrou; Sean Crosson; Aretha Fiebig
Journal:  Curr Opin Microbiol       Date:  2017-02-11       Impact factor: 7.934

7.  The power of two: arginine 51 and arginine 239* from a neighboring subunit are essential for catalysis in α-amino-β-carboxymuconate-epsilon-semialdehyde decarboxylase.

Authors:  Lu Huo; Ian Davis; Lirong Chen; Aimin Liu
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

8.  Structural basis for catalytic activation of a serine recombinase.

Authors:  Ross A Keenholtz; Sally-J Rowland; Martin R Boocock; W Marshall Stark; Phoebe A Rice
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

9.  One protein, two enzymes revisited: a structural entropy switch interconverts the two isoforms of acireductone dioxygenase.

Authors:  Tingting Ju; Rachel Beaulieu Goldsmith; Sergio C Chai; Michael J Maroney; Susan Sondej Pochapsky; Thomas C Pochapsky
Journal:  J Mol Biol       Date:  2006-08-26       Impact factor: 5.469

10.  Mechanistic investigations of the dehydration reaction of lacticin 481 synthetase using site-directed mutagenesis.

Authors:  Young Ok You; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2007-04-25       Impact factor: 3.162

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