Literature DB >> 16127452

Real ribozymes suggest a relaxed error threshold.

Adám Kun1, Mauro Santos, Eörs Szathmáry.   

Abstract

The error threshold for replication, the critical copying fidelity below which the fittest genotype deterministically disappears, limits the length of the genome that can be maintained by selection. Primordial replication must have been error-prone, and so early replicators are thought to have been necessarily short. The error threshold also depends on the fitness landscape. In an RNA world, many neutral and compensatory mutations can raise the threshold, below which the functional phenotype, rather than a particular sequence, is still present. Here we show, on the basis of comparative analysis of two extensively mutagenized ribozymes, that with a copying fidelity of 0.999 per digit per replication the phenotypic error threshold rises well above 7,000 nucleotides, which permits the selective maintenance of a functionally rich riboorganism with a genome of more than 100 different genes, the size of a tRNA. This requires an order of magnitude of improvement in the accuracy of in vitro-generated polymerase ribozymes. Incidentally, this genome size coincides with that estimated for a minimal cell achieved by top-down analysis, omitting the genes dealing with translation.

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Year:  2005        PMID: 16127452     DOI: 10.1038/ng1621

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  49 in total

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5.  The role of complex formation and deleterious mutations for the stability of RNA-like replicator systems.

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6.  Lack of evolvability in self-sustaining autocatalytic networks constraints metabolism-first scenarios for the origin of life.

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Review 7.  What does virus evolution tell us about virus origins?

Authors:  Edward C Holmes
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8.  Efficient and rapid template-directed nucleic acid copying using 2'-amino-2',3'-dideoxyribonucleoside-5'-phosphorimidazolide monomers.

Authors:  Jason P Schrum; Alonso Ricardo; Mathangi Krishnamurthy; J Craig Blain; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

9.  Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication.

Authors:  Sudha Rajamani; Justin K Ichida; Tibor Antal; Douglas A Treco; Kevin Leu; Martin A Nowak; Jack W Szostak; Irene A Chen
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

10.  Quasispecies-like behavior observed in catalytic RNA populations evolving in a test tube.

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Journal:  BMC Evol Biol       Date:  2010-03-23       Impact factor: 3.260

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