Literature DB >> 16118416

Improved PCR method for amplification of GC-rich DNA sequences.

F Hubé1, P Reverdiau, S Iochmann, Y Gruel.   

Abstract

Most housekeeping genes, tumor-suppressor genes, and approx 40% of tissue-specific genes contain G+C sequences in their promoter region that were very difficult to amplify. In this report, we propose an improved polymerase chain reaction (PCR) method to be used for successful amplification of the tissue factor pathway inhibitor (TFPI)-2 gene promoter region that exhibit >70% G+C content in a sequence of approx 300 bp and a complete CpG island region spanning exon 1, the three transcription initiation sites, and the translation start site. Therefore, this method can be recommended to amplify other GC-rich genomic templates.

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Year:  2005        PMID: 16118416     DOI: 10.1385/MB:31:1:081

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  13 in total

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7.  Characterization and functional analysis of TFPI-2 gene promoter in a human choriocarcinoma cell line.

Authors:  F Hubé; P Reverdiau; S Iochmann; C Cherpi-Antar; Y Gruel
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9.  Transcriptional silencing of the TFPI-2 gene by promoter hypermethylation in choriocarcinoma cells.

Authors:  Florent Hubé; Pascale Reverdiau; Sophie Iochmann; Jérôme Rollin; Catherine Cherpi-Antar; Yves Gruel
Journal:  Biol Chem       Date:  2003-07       Impact factor: 3.915

Review 10.  DNA methylation and gene silencing in cancer: which is the guilty party?

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  16 in total

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8.  1,2-propanediol-trehalose mixture as a potent quantitative real-time PCR enhancer.

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9.  Effects of GC bias in next-generation-sequencing data on de novo genome assembly.

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10.  Amplification of GC-rich Putative Mouse PeP Promoter using Betaine and DMSO in Ammonium Sulfate Polymerase Chain Reaction Buffer.

Authors:  Tahere Seifi; Kamran Ghaedi; Ahmad Salamian; Sommayeh Tanhaei; Forouzan Safari; Zohreh Hojati; Manuchehr Tavassoli; Hossein Baharvand; Mohammad-Hossein Nasr Esfahani
Journal:  Avicenna J Med Biotechnol       Date:  2012-10
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