Literature DB >> 16109423

Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis.

Jeffrey E Lee1, G David Smith, Cathy Horvatin, David J T Huang, Kenneth A Cornell, Michael K Riscoe, P Lynne Howell.   

Abstract

MTA/AdoHcy nucleosidase (MTAN) irreversibly hydrolyzes the N9-C1' bond in the nucleosides, 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (AdoHcy) to form adenine and the corresponding thioribose. MTAN plays a vital role in metabolic pathways involving methionine recycling, biological methylation, polyamine biosynthesis, and quorum sensing. Crystal structures of a wild-type (WT) MTAN complexed with glycerol, and mutant-enzyme and mutant-product complexes have been determined at 2.0A, 2.0A, and 2.1A resolution, respectively. The WT MTAN-glycerol structure provides a purine-free model and in combination with the previously solved thioribose-free MTAN-ADE structure, we now have separate apo structures for both MTAN binding subsites. The purine and thioribose-free states reveal an extensive enzyme-immobilized water network in their respective binding subsites. The Asp197Asn MTAN-MTA and Glu12Gln MTAN-MTR.ADE structures are the first enzyme-substrate and enzyme-product complexes reported for MTAN, respectively. These structures provide representative snapshots along the reaction coordinate and allow insight into the conformational changes of the enzyme and the nucleoside substrate. A "catalytic movie" detailing substrate binding, catalysis, and product release is presented.

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Year:  2005        PMID: 16109423     DOI: 10.1016/j.jmb.2005.07.027

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  20 in total

1.  Molecular determinants of substrate specificity in plant 5'-methylthioadenosine nucleosidases.

Authors:  Karen K W Siu; Jeffrey E Lee; Janice R Sufrin; Barbara A Moffatt; Martin McMillan; Kenneth A Cornell; Chelsea Isom; P Lynne Howell
Journal:  J Mol Biol       Date:  2008-02-08       Impact factor: 5.469

2.  Crystallization and preliminary X-ray diffraction analysis of the interaction of Aeromonas hydrophila MtaN-1 with S-adenosylhomocysteine.

Authors:  Yongbin Xu; Chun Shan Quan; Xiaoling Jin; Xuanzhen Jin; Jing Zhao; Liming Jin; Jin Sik Kim; Jianyun Guo; Shengdi Fan; Nam Chul Ha
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-20       Impact factor: 1.056

3.  Crystal structures of the Helicobacter pylori MTAN enzyme reveal specific interactions between S-adenosylhomocysteine and the 5'-alkylthio binding subsite.

Authors:  Vidhi Mishra; Donald R Ronning
Journal:  Biochemistry       Date:  2012-11-20       Impact factor: 3.162

4.  Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway.

Authors:  Michael L Barta; Keisha Thomas; Hongling Yuan; Scott Lovell; Kevin P Battaile; Vern L Schramm; P Scott Hefty
Journal:  J Biol Chem       Date:  2014-09-24       Impact factor: 5.157

5.  5'-methylthioadenosine nucleosidase is implicated in playing a key role in a modified futalosine pathway for menaquinone biosynthesis in Campylobacter jejuni.

Authors:  Xu Li; Dmitry Apel; Erin C Gaynor; Martin E Tanner
Journal:  J Biol Chem       Date:  2011-04-13       Impact factor: 5.157

6.  Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states.

Authors:  Michael T Banco; Vidhi Mishra; Andreas Ostermann; Tobias E Schrader; Gary B Evans; Andrey Kovalevsky; Donald R Ronning
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

7.  Synthesis, Activity and Metabolic Stability of Non-Ribose Containing Inhibitors of Histone Methyltransferase DOT1L.

Authors:  Lisheng Deng; Li Zhang; Yuan Yao; Cong Wang; Michele S Redell; Shuo Dong; Yongcheng Song
Journal:  Medchemcomm       Date:  2013-05-01       Impact factor: 3.597

8.  Structure of Staphylococcus aureus 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.

Authors:  Karen K W Siu; Jeffrey E Lee; G David Smith; Cathy Horvatin-Mrakovcic; P Lynne Howell
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-30

9.  Salmonella enterica MTAN at 1.36 Å resolution: a structure-based design of tailored transition state analogs.

Authors:  Antti M Haapalainen; Keisha Thomas; Peter C Tyler; Gary B Evans; Steven C Almo; Vern L Schramm
Journal:  Structure       Date:  2013-05-16       Impact factor: 5.006

10.  Assessment of methylthioadenosine/S-adenosylhomocysteine nucleosidases of Borrelia burgdorferi as targets for novel antimicrobials using a novel high-throughput method.

Authors:  Kenneth A Cornell; Shekerah Primus; Jorge A Martinez; Nikhat Parveen
Journal:  J Antimicrob Chemother       Date:  2009-04-17       Impact factor: 5.790

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