Literature DB >> 1610831

Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5'-phosphate.

T Yano1, S Kuramitsu, S Tanase, Y Morino, H Kagamiyama.   

Abstract

Asp222 is an invariant residue in all known sequences of aspartate aminotransferases from a variety of sources and is located within a distance of strong ionic interaction with N(1) of the coenzyme, pyridoxal 5'-phosphate (PLP), or pyridoxamine 5'-phosphate (PMP). This residue of Escherichia coli aspartate aminotransferase was replaced by Ala, Asn, or Glu by site-directed mutagenesis. The PLP form of the mutant enzyme D222E showed pH-dependent spectral changes with a pKa value of 6.44 for the protonation of the internal aldimine bond, slightly lower than that (6.7) for the wild-type enzyme. In contrast, the internal aldimine bond in the D222A or D222N enzyme did not titrate over the pH range 5.3-9.5, and a 430-nm band attributed to the protonated aldimine persisted even at high pH. The binding affinity of the D222A and D222N enzymes for PMP decreased by 3 orders of magnitude as compared to that of the wild-type enzyme. Pre-steady-state half-transamination reactions of all the mutant enzymes with substrates exhibited anomalous progress curves comprising multiphasic exponential processes, which were accounted for by postulating several kinetically different enzyme species for both the PLP and PMP forms of each mutant enzyme. While the replacement of Asp222 by Glu yielded fairly active enzyme species, the replacement by Ala and Asn resulted in 8600- and 20,000-fold decreases, respectively, in the catalytic efficiency (kmax/Kd value for the most active species of each mutant enzyme) in the reactions of the PLP form with aspartate. In contrast, the catalytic efficiency of the PMP form of the D222A or D222N enzyme with 2-oxoglutarate was still retained at a level as high as 2-10% of that of the wild-type enzyme. The presteady-state reactions of these two mutant enzymes with [2-2H]aspartate revealed a deuterium isotope effect (kH/kD = 6.0) greater than that [kH/kD = 2.2; Kuramitsu, S., Hiromi, K., Hayashi, H., Morino, Y., & Kagamiyama, H. (1990) Biochemistry 29, 5469-5476] for the wild-type enzyme. These findings indicate that the presence of a negatively charged residue at position 222 is particularly critical for the withdrawal of the alpha-proton of the amino acid substrate and accelerates this rate-determining step by about 5 kcal.mol-1. Thus it is concluded that Asp222 serves as a protein ligand tethering the coenzyme in a productive mode within the active site and stabilizes the protonated N(1) of the coenzyme to strengthen the electron-withdrawing capacity of the coenzyme.

Entities:  

Mesh:

Substances:

Year:  1992        PMID: 1610831     DOI: 10.1021/bi00140a025

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Asp-89: a critical residue in maintaining the oligomeric structure of sheep liver cytosolic serine hydroxymethyltransferase.

Authors:  J V Krishna Rao; J R Jagath; B Sharma; N Appaji Rao; H S Savithri
Journal:  Biochem J       Date:  1999-10-01       Impact factor: 3.857

2.  root uv-b sensitive mutants are suppressed by specific mutations in ASPARTATE AMINOTRANSFERASE2 and by exogenous vitamin B6.

Authors:  Colin D Leasure; Hong-Yun Tong; Xue-Wen Hou; Amy Shelton; Mike Minton; Raymond Esquerra; Sanja Roje; Hanjo Hellmann; Zheng-Hui He
Journal:  Mol Plant       Date:  2011-04-21       Impact factor: 13.164

3.  Crystal structure of Trypanosoma cruzi tyrosine aminotransferase: substrate specificity is influenced by cofactor binding mode.

Authors:  W Blankenfeldt; C Nowicki; M Montemartini-Kalisz; H M Kalisz; H J Hecht
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

4.  The structure of serine hydroxymethyltransferase as modeled by homology and validated by site-directed mutagenesis.

Authors:  S Pascarella; S Angelaccio; R Contestabile; S Delle Fratte; M Di Salvo; F Bossa
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

Review 5.  PLP-dependent H(2)S biogenesis.

Authors:  Sangita Singh; Ruma Banerjee
Journal:  Biochim Biophys Acta       Date:  2011-02-17

Review 6.  5-Aminolevulinate synthase catalysis: The catcher in heme biosynthesis.

Authors:  Bosko M Stojanovski; Gregory A Hunter; Insung Na; Vladimir N Uversky; Rays H Y Jiang; Gloria C Ferreira
Journal:  Mol Genet Metab       Date:  2019-06-13       Impact factor: 4.797

Review 7.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

8.  Crystal structure of cystalysin from Treponema denticola: a pyridoxal 5'-phosphate-dependent protein acting as a haemolytic enzyme.

Authors:  H I Krupka; R Huber; S C Holt; T Clausen
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

9.  A hydrolase from Lactobacillus sakei moonlights as a transaminase.

Authors:  Quirin Sinz; Simone Freiding; Rudi F Vogel; Wilfried Schwab
Journal:  Appl Environ Microbiol       Date:  2013-01-25       Impact factor: 4.792

10.  Active site model for gamma-aminobutyrate aminotransferase explains substrate specificity and inhibitor reactivities.

Authors:  M D Toney; S Pascarella; D De Biase
Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.