Literature DB >> 9761478

The structure of serine hydroxymethyltransferase as modeled by homology and validated by site-directed mutagenesis.

S Pascarella1, S Angelaccio, R Contestabile, S Delle Fratte, M Di Salvo, F Bossa.   

Abstract

We describe a model for the three-dimensional structure of E. coli serine hydroxymethyltransferase based on its sequence homology with other PLP enzymes of the alpha-family and whose tertiary structures are known. The model suggests that certain amino acid residues at the putative active site of the enzyme can adopt specific roles in the catalytic mechanism. These proposals were supported by analysis of the properties of a number of site-directed mutants. New active site features are also proposed for further experimental testing.

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Year:  1998        PMID: 9761478      PMCID: PMC2144154          DOI: 10.1002/pro.5560070913

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  37 in total

1.  A comparison of the heme binding pocket in globins and cytochrome b5.

Authors:  M G Rossmann; P Argos
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

2.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

3.  The role of His-134, -147, and -150 residues in subunit assembly, cofactor binding, and catalysis of sheep liver cytosolic serine hydroxymethyltransferase.

Authors:  J R Jagath; B Sharma; N A Rao; H S Savithri
Journal:  J Biol Chem       Date:  1997-09-26       Impact factor: 5.157

4.  Profile analysis: detection of distantly related proteins.

Authors:  M Gribskov; A D McLachlan; D Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

5.  Serine hydroxymethyltransferase: mechanism of the racemization and transamination of D- and L-alanine.

Authors:  K Shostak; V Schirch
Journal:  Biochemistry       Date:  1988-10-18       Impact factor: 3.162

6.  Crystal structure of glutamate-1-semialdehyde aminomutase: an alpha2-dimeric vitamin B6-dependent enzyme with asymmetry in structure and active site reactivity.

Authors:  M Hennig; B Grimm; R Contestabile; R A John; J N Jansonius
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-13       Impact factor: 11.205

7.  Comparative model-building of the mammalian serine proteases.

Authors:  J Greer
Journal:  J Mol Biol       Date:  1981-12-25       Impact factor: 5.469

8.  Serine transhydroxymethylase from rabbit liver. Sequence of anonapeptide at the pyridoxal-5'-phosphate-binding site.

Authors:  F Bossa; D Barra; F Martini; L V Schirch; P Fasella
Journal:  Eur J Biochem       Date:  1976-11-15

9.  Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure.

Authors:  J F Kirsch; G Eichele; G C Ford; M G Vincent; J N Jansonius; H Gehring; P Christen
Journal:  J Mol Biol       Date:  1984-04-15       Impact factor: 5.469

10.  Properties of a serine hydroxymethyltransferase in which an active site histidine has been changed to an asparagine by site-directed mutagenesis.

Authors:  S Hopkins; V Schirch
Journal:  J Biol Chem       Date:  1986-03-05       Impact factor: 5.157

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  1 in total

1.  Structure-based mechanism for early PLP-mediated steps of rabbit cytosolic serine hydroxymethyltransferase reaction.

Authors:  Martino L Di Salvo; J Neel Scarsdale; Galina Kazanina; Roberto Contestabile; Verne Schirch; H Tonie Wright
Journal:  Biomed Res Int       Date:  2013-07-15       Impact factor: 3.411

  1 in total

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