Literature DB >> 16106752

Vector-capping: a simple method for preparing a high-quality full-length cDNA library.

Seishi Kato1, Kuniyo Ohtoko, Hideki Ohtake, Tomoko Kimura.   

Abstract

Full-length cDNAs play an essential role in identifying genes and determining their promoter regions. Here we describe a simple method for constructing a full-length cDNA library, which has the following advantages: (i) it consists of only three steps including direct ligation between a vector and a cDNA strand using T4 RNA ligase, (ii) it contains neither a PCR process generating mutations nor restriction enzyme treatment causing truncation of cDNA, (iii) the intactness of cDNA is assured due to the presence of an additional dGMP at its 5' end, (iv) approximately 95% of cDNA clones are full-length when cultured cells or fresh tissues are used, (v) several micrograms of total RNA without mRNA purification is sufficient for preparation of a library containing >10(5) independent clones, and (vi) a long-sized full-length cDNA up to 9.5 kbp can be cloned. This method will accelerate comprehensive gene analysis in a variety of eukaryotes.

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Year:  2005        PMID: 16106752     DOI: 10.1093/dnares/12.1.53

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  25 in total

1.  Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver.

Authors:  Nobuaki Suzuki; Hirotaka Uefuji; Takashi Nishikawa; Yukio Mukai; Atsushi Yamashita; Masahira Hattori; Naotake Ogasawara; Takeshi Bamba; Ei-ichiro Fukusaki; Akio Kobayashi; Yoshiyuki Ogata; Nozomu Sakurai; Hideyuki Suzuki; Daisuke Shibata; Yoshihisa Nakazawa
Journal:  Planta       Date:  2012-06-24       Impact factor: 4.116

2.  Identification and characterization of class B scavenger receptor CD36 from the hard tick, Haemaphysalis longicornis.

Authors:  Kyaw Min Aung; Damdinsuren Boldbaatar; Min Liao; Rika Umemiya-Shirafuji; Sumihiro Nakao; Terushige Matsuoka; Tetsuya Tanaka; Kozo Fujisaki
Journal:  Parasitol Res       Date:  2010-09-25       Impact factor: 2.289

3.  RNAi of the translation inhibition gene 4E-BP identified from the hard tick, Haemaphysalis longicornis, affects lipid storage during the off-host starvation period of ticks.

Authors:  Aiko Kume; Damdinsuren Boldbaatar; Yuko Takazawa; Rika Umemiya-Shirafuji; Tetsuya Tanaka; Kozo Fujisaki
Journal:  Parasitol Res       Date:  2012-05-23       Impact factor: 2.289

4.  Functional analysis of a novel cysteine-rich antimicrobial peptide from the salivary glands of the tick Rhipicephalus haemaphysaloides.

Authors:  Houshuang Zhang; Siqi Yang; Haiyan Gong; Jie Cao; Yongzhi Zhou; Jinlin Zhou
Journal:  Parasitol Res       Date:  2015-07-09       Impact factor: 2.289

5.  Characterization of MHC class I transcripts of a Malaysian cynomolgus macaque by high-throughput pyrosequencing and EST libraries.

Authors:  Alice Aarnink; Pol-André Apoil; Ichiro Takahashi; Naoki Osada; Antoine Blancher
Journal:  Immunogenetics       Date:  2011-06-28       Impact factor: 2.846

6.  Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics.

Authors:  Koh Aoki; Kentaro Yano; Ayako Suzuki; Shingo Kawamura; Nozomu Sakurai; Kunihiro Suda; Atsushi Kurabayashi; Tatsuya Suzuki; Taneaki Tsugane; Manabu Watanabe; Kazuhide Ooga; Maiko Torii; Takanori Narita; Tadasu Shin-I; Yuji Kohara; Naoki Yamamoto; Hideki Takahashi; Yuichiro Watanabe; Mayumi Egusa; Motoichiro Kodama; Yuki Ichinose; Mari Kikuchi; Sumire Fukushima; Akiko Okabe; Tsutomu Arie; Yuko Sato; Katsumi Yazawa; Shinobu Satoh; Toshikazu Omura; Hiroshi Ezura; Daisuke Shibata
Journal:  BMC Genomics       Date:  2010-03-30       Impact factor: 3.969

7.  Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species.

Authors:  Albert Lee; Kasper Daniel Hansen; James Bullard; Sandrine Dudoit; Gavin Sherlock
Journal:  PLoS Genet       Date:  2008-12-19       Impact factor: 5.917

8.  Characterization of unique heavy chain fibroin filaments spun underwater by the caddisfly Stenopsyche marmorata (Trichoptera; Stenopsychidae).

Authors:  Yujun Wang; Kazumi Sanai; Hongxiu Wen; Tianfu Zhao; Masao Nakagaki
Journal:  Mol Biol Rep       Date:  2009-10-20       Impact factor: 2.316

9.  Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method.

Authors:  Mio Oshikawa; Yoshiko Sugai; Ron Usami; Kuniyo Ohtoko; Shigeru Toyama; Seishi Kato
Journal:  DNA Res       Date:  2008-05-16       Impact factor: 4.458

10.  Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus.

Authors:  Naoki Osada; Makoto Hirata; Reiko Tanuma; Yutaka Suzuki; Sumio Sugano; Keiji Terao; Jun Kusuda; Yosuke Kameoka; Katsuyuki Hashimoto; Ichiro Takahashi
Journal:  BMC Res Notes       Date:  2009-09-29
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