Literature DB >> 16098632

Do disparate mechanisms of duplication add similar genes to the genome?

Jerel C Davis1, Dmitri A Petrov.   

Abstract

Gene duplication is the fundamental source of new genes. Biases in duplication have profound implications for the dynamics of gene content during evolution. In this article, we compare genes arising from whole gene duplication (WGD), smaller scale duplication (SSD) and singletons in Saccharomyces cerevisiae. Our results demonstrate that genes duplicated by WGD and SSD are similarly biased with respect to codon bias and evolutionary rate, although differing significantly in their functional constituency.

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Year:  2005        PMID: 16098632     DOI: 10.1016/j.tig.2005.07.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  41 in total

1.  Functional analysis of gene duplications in Saccharomyces cerevisiae.

Authors:  Yuanfang Guan; Maitreya J Dunham; Olga G Troyanskaya
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

Review 2.  Biological consequences of dosage dependent gene regulatory systems.

Authors:  James A Birchler; Hong Yao; Siva Chudalayandi
Journal:  Biochim Biophys Acta       Date:  2007-01-04

Review 3.  The gene balance hypothesis: from classical genetics to modern genomics.

Authors:  James A Birchler; Reiner A Veitia
Journal:  Plant Cell       Date:  2007-02-09       Impact factor: 11.277

4.  Evolution of exceptionally large genes in prokaryotes.

Authors:  Min-Chieh Kuo; Li-Fang Chou; Hwan-You Chang
Journal:  J Mol Evol       Date:  2008-03-06       Impact factor: 2.395

5.  Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Authors:  Karin S Kassahn; Vinh T Dang; Simon J Wilkins; Andrew C Perkins; Mark A Ragan
Journal:  Genome Res       Date:  2009-05-13       Impact factor: 9.043

Review 6.  Lineage-specific transcription factors and the evolution of gene regulatory networks.

Authors:  Katja Nowick; Lisa Stubbs
Journal:  Brief Funct Genomics       Date:  2010-01-16       Impact factor: 4.241

Review 7.  Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes.

Authors:  Patrick P Edger; J Chris Pires
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

8.  Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants.

Authors:  Hui Guo; Tae-Ho Lee; Xiyin Wang; Andrew H Paterson
Journal:  Plant Physiol       Date:  2013-04-11       Impact factor: 8.340

9.  Posttranslational regulation impacts the fate of duplicated genes.

Authors:  Grigoris D Amoutzias; Ying He; Jonathan Gordon; Dimitris Mossialos; Stephen G Oliver; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

10.  Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans.

Authors:  Vaishali Katju; James C Farslow; Ulfar Bergthorsson
Journal:  Genome Biol       Date:  2009-07-13       Impact factor: 13.583

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