Literature DB >> 16098630

The evolution of noncoding DNA: how much junk, how much func?

Cristian I Castillo-Davis1.   

Abstract

Comparative sequence analysis on a genomic scale has opened the door for the systematic analysis of cis-acting regulatory DNA. It is now possible to begin to answer basic questions such as, how much meaningful noncoding sequence is in the genome? How strong is natural selection on functional noncoding sequences in different species? Two recent articles have capitalized on the comparative genomic approach in an attempt to answer these questions with surprising results.

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Year:  2005        PMID： 16098630     DOI： 10.1016/j.tig.2005.08.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  19 in total

1.  Defects of the Carney complex gene (PRKAR1A) in odontogenic tumors.

Authors:  Sílvia F Sousa; Ricardo S Gomez; Marina G Diniz; Vanessa F Bernardes; Flávia F C Soares; João Artur R Brito; Sophie Liu; Hélder Antônio R Pontes; Constantine A Stratakis; Carolina C Gomes
Journal:  Endocr Relat Cancer       Date:  2015-04-13       Impact factor: 5.678

2.  Search for basonuclin target genes.

Authors:  Junwen Wang; Shengliang Zhang; Richard M Schultz; Hung Tseng
Journal:  Biochem Biophys Res Commun       Date:  2006-08-10       Impact factor: 3.575

3.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

4.  EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot.

Authors:  John E Carlson; James H Leebens-Mack; P Kerr Wall; Laura M Zahn; Lukas A Mueller; Lena L Landherr; Yi Hu; Daniel C Ilut; Jennifer M Arrington; Stephanie Choirean; Annette Becker; Dawn Field; Steven D Tanksley; Hong Ma; Claude W dePamphilis
Journal:  Plant Mol Biol       Date:  2006-08-17       Impact factor: 4.076

Review 5.  Revisiting Mendelian disorders through exome sequencing.

Authors:  Chee-Seng Ku; Nasheen Naidoo; Yudi Pawitan
Journal:  Hum Genet       Date:  2011-02-18       Impact factor: 4.132

6.  High level of structural polymorphism driven by mobile elements in the Hox genomic region of the Chaetognath Spadella cephaloptera.

Authors:  Ferdinand Marlétaz; Gabor Gyapay; Yannick Le Parco
Journal:  Genome Biol Evol       Date:  2010-08-01       Impact factor: 3.416

7.  Unravelling cis-regulatory elements in the genome of the smallest photosynthetic eukaryote: phylogenetic footprinting in Ostreococcus.

Authors:  Gwenael Piganeau; Klaas Vandepoele; Sébastien Gourbière; Yves Van de Peer; Hervé Moreau
Journal:  J Mol Evol       Date:  2009-08-20       Impact factor: 2.395

8.  Genome-wide analysis of conservation and divergence of microsatellites in rice.

Authors:  Manish Roorkiwal; Atul Grover; Prakash C Sharma
Journal:  Mol Genet Genomics       Date:  2009-05-30       Impact factor: 3.291

9.  Identifying putative promoter regions of Hermansky-Pudlak syndrome genes by means of phylogenetic footprinting.

Authors:  Horia Stanescu; Tyra G Wolfsberg; R Travis Moreland; Mariam H Ayub; Elizabeth Erickson; Wendy Westbroek; Marjan Huizing; William A Gahl; Amanda Helip-Wooley
Journal:  Ann Hum Genet       Date:  2009-07       Impact factor: 1.670

10.  DUX4c is up-regulated in FSHD. It induces the MYF5 protein and human myoblast proliferation.

Authors:  Eugénie Ansseau; Dalila Laoudj-Chenivesse; Aline Marcowycz; Alexandra Tassin; Céline Vanderplanck; Sébastien Sauvage; Marietta Barro; Isabelle Mahieu; Axelle Leroy; India Leclercq; Véronique Mainfroid; Denise Figlewicz; Vincent Mouly; Gillian Butler-Browne; Alexandra Belayew; Frédérique Coppée
Journal:  PLoS One       Date:  2009-10-15       Impact factor: 3.240
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