Literature DB >> 16082412

Single-stranded DNA-binding proteins (SSBs) -- sources and applications in molecular biology.

Józef Kur1, Marcin Olszewski, Anna Długołecka, Paweł Filipkowski.   

Abstract

Single-stranded DNA-binding proteins (SSBs) play essential roles in DNA replication, recombination, and repair in bacteria, archaea and eukarya. The SSBs share a common core ssDNA-binding domain with a conserved OB (oligonucleotide/oligosaccharide binding) fold. This ssDNA-binding domain was presumably present in the common ancestor to all three major branches of life. In recent years, there has been an increasing interest in SSBs because they are useful for molecular biology methods and for analytical purposes. In this review, we concentrate on recent advances in the discovery of new sources of SSBs as well as certain aspects of their applications in analytical sciences.

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Year:  2005        PMID: 16082412

Source DB:  PubMed          Journal:  Acta Biochim Pol        ISSN: 0001-527X            Impact factor:   2.149


  18 in total

1.  Specificity of binding of single-stranded DNA-binding protein to its target.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2012-02-06       Impact factor: 3.162

2.  Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners.

Authors:  Orly Dym; Shira Albeck; Tamar Unger; Jossef Jacobovitch; Anna Branzburg; Yigal Michael; Daphna Frenkiel-Krispin; Sharon Grayer Wolf; Michael Elbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

Review 3.  Imaging of DNA and Protein-DNA Complexes with Atomic Force Microscopy.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2016       Impact factor: 1.807

4.  Molecular genetic and biochemical characterization of the vaccinia virus I3 protein, the replicative single-stranded DNA binding protein.

Authors:  Matthew D Greseth; Kathleen A Boyle; Matthew S Bluma; Bethany Unger; Matthew S Wiebe; Jamaria A Soares-Martins; Nadi T Wickramasekera; James Wahlberg; Paula Traktman
Journal:  J Virol       Date:  2012-03-21       Impact factor: 5.103

5.  A comparative study of protein-ssDNA interactions.

Authors:  Maoxuan Lin; Fareeha K Malik; Jun-Tao Guo
Journal:  NAR Genom Bioinform       Date:  2021-02-23

6.  Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach.

Authors:  Michael J Morten; Jose R Peregrina; Maria Figueira-Gonzalez; Katrin Ackermann; Bela E Bode; Malcolm F White; J Carlos Penedo
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

7.  Characterization of exceptionally thermostable single-stranded DNA-binding proteins from Thermotoga maritima and Thermotoga neapolitana.

Authors:  Marcin Olszewski; Anna Grot; Marek Wojciechowski; Marta Nowak; Małgorzata Mickiewicz; Józef Kur
Journal:  BMC Microbiol       Date:  2010-10-15       Impact factor: 3.605

8.  Single-stranded DNA binding protein from human malarial parasite Plasmodium falciparum is encoded in the nucleus and targeted to the apicoplast.

Authors:  Dhaneswar Prusty; Ashraf Dar; Rashmi Priya; Atul Sharma; Srikanta Dana; Nirupam Roy Choudhury; N Subba Rao; Suman Kumar Dhar
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

9.  Identification and characterization of a single-stranded DNA-binding protein from thermophilic bacteriophage GVE2.

Authors:  Dahai Wei; Xiaobo Zhang
Journal:  Virus Genes       Date:  2007-10-16       Impact factor: 2.332

10.  Analysis and classification of DNA-binding sites in single-stranded and double-stranded DNA-binding proteins using protein information.

Authors:  Wei Wang; Juan Liu; Yi Xiong; Lida Zhu; Xionghui Zhou
Journal:  IET Syst Biol       Date:  2014-08       Impact factor: 1.615

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