Literature DB >> 16080766

Self-consistent mean-field model based on molecular dynamics: application to lipid-cholesterol bilayers.

George A Khelashvili1, Sagar A Pandit, H L Scott.   

Abstract

We have developed a dynamic self-consistent mean-field model, based on molecular-dynamics simulations, to study lipid-cholesterol bilayers. In this model the lipid bilayer is represented as a two-dimensional lattice field in the lipid chain order parameters, while cholesterol molecules are represented by hard rods. The motion of rods in the system is continuous and is not confined to lattice cells. The statistical mechanics of chain ordering is described by a mean field derived from an extension of a model due to Marcelja. The time evolution of the system is governed by stochastic equations. The ensemble of chain configurations required in partition sums, and the energies of interaction, are taken from atomistic level molecular-dynamics simulations of lipid bilayers. The model allows us to simulate systems 500 nm in lateral size for 20 micros time scales, or greater. We have applied the model to dipalmitoyl-phosphatidylcholine-cholesterol (Chol) bilayers at 50 degrees C for Chol concentrations between 2% and 33%. At low concentrations of Chol (2%-4%), the model predicts the formation of isolated clusters of Chol surrounded by relatively ordered lipid chains, randomly dispersed in the disordered bilayer. With increasing Chol composition, regions of Chol-induced order begin to overlap. Starting from about 11% Chol this ordering effect becomes system wide and regions unaffected by Chol are no longer detectable. From the analysis of properties of the model we conclude that the change in lipid chain order with increasing Chol concentration is continuous over the 20-mus scale of the simulations. We also conclude that at 50 degrees C no large-scale Chol-rich and Chol-depleted coexisting phase-separated regions form at any concentration. At no point in any of the simulations do we observe a higher degree of lateral organization, such as Chol-based superlattice structures.

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Year:  2005        PMID: 16080766      PMCID: PMC1752223          DOI: 10.1063/1.1943412

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  29 in total

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Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

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Journal:  J Chem Phys       Date:  2004-11-08       Impact factor: 3.488

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Journal:  Biochemistry       Date:  1975-06-03       Impact factor: 3.162

7.  A solid-state NMR study of phospholipid-cholesterol interactions: sphingomyelin-cholesterol binary systems.

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Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

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Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

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Journal:  Biophys J       Date:  1984-08       Impact factor: 4.033

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Journal:  Biochemistry       Date:  1993-12-07       Impact factor: 3.162

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  16 in total

1.  Self-consistent mean-field model for palmitoyloleoylphosphatidylcholine-palmitoyl sphingomyelin-cholesterol lipid bilayers.

Authors:  Paul W Tumaneng; Sagar A Pandit; Guijun Zhao; H L Scott
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-03-31

2.  A structurally relevant coarse-grained model for cholesterol.

Authors:  K R Hadley; C McCabe
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

Review 3.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

4.  Lateral organization of complex lipid mixtures from multiscale modeling.

Authors:  Paul W Tumaneng; Sagar A Pandit; Guijun Zhao; H L Scott
Journal:  J Chem Phys       Date:  2010-02-14       Impact factor: 3.488

5.  'KMC-TDGL'-a coarse-grained methodology for simulating interfacial dynamics in complex fluids: application to protein-mediated membrane processes.

Authors:  J Weinstein; R Radhakrishnan
Journal:  Mol Phys       Date:  2006       Impact factor: 1.962

6.  Lateral organization in lipid-cholesterol mixed bilayers.

Authors:  Sagar A Pandit; George Khelashvili; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

7.  Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.

Authors:  Sagar A Pandit; See-Wing Chiu; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

8.  Phase transitions in coarse-grained lipid bilayers containing cholesterol by molecular dynamics simulations.

Authors:  Qaiser Waheed; Richard Tjörnhammar; Olle Edholm
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

9.  Phenomenological model and phase behavior of saturated and unsaturated lipids and cholesterol.

Authors:  G Garbès Putzel; M Schick
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

Review 10.  Cholesterol homeostasis and the escape tendency (activity) of plasma membrane cholesterol.

Authors:  Yvonne Lange; Theodore L Steck
Journal:  Prog Lipid Res       Date:  2008-03-29       Impact factor: 16.195

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