Literature DB >> 16075431

Amine hydration: a united-atom force-field solution.

Chris Oostenbrink1, Daniel Juchli, Wilfred F van Gunsteren.   

Abstract

The free energies of hydration for ammonia and mono-, di-, and trimethylated amines experimentally show an unexpected trend that has, in the past, been difficult to reproduce computationally. Absolute and relative free energies of hydration of these compounds were calculated using the OPLS all-atom and the united-atom GROMOS force fields. Both force fields reproduce the relative free energy of hydration, but the absolute free energies of hydration were only reproduced within kBT when using the recently developed GROMOS parameter set 53A6. Relative free energies of solvation in chloroform could also be reproduced indicating a proper partitioning of the compounds between polar and apolar media. Overall we conclude that it is possible to resolve the amine hydration problem using a simple united-atom force field.

Entities:  

Year:  2005        PMID: 16075431     DOI: 10.1002/cphc.200400542

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  3 in total

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Authors:  David J Huggins; Michael D Altman; Bruce Tidor
Journal:  Proteins       Date:  2009-04

Review 2.  Rational approaches to improving selectivity in drug design.

Authors:  David J Huggins; Woody Sherman; Bruce Tidor
Journal:  J Med Chem       Date:  2012-01-12       Impact factor: 7.446

3.  A systematic framework for molecular dynamics simulations of protein post-translational modifications.

Authors:  Drazen Petrov; Christian Margreitter; Melanie Grandits; Chris Oostenbrink; Bojan Zagrovic
Journal:  PLoS Comput Biol       Date:  2013-07-18       Impact factor: 4.475

  3 in total

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