Literature DB >> 16074985

Missense meanderings in sequence space: a biophysical view of protein evolution.

Mark A DePristo1, Daniel M Weinreich, Daniel L Hartl.   

Abstract

Proteins are finicky molecules; they are barely stable and are prone to aggregate, but they must function in a crowded environment that is full of degradative enzymes bent on their destruction. It is no surprise that many common diseases are due to missense mutations that affect protein stability and aggregation. Here we review the literature on biophysics as it relates to molecular evolution, focusing on how protein stability and aggregation affect organismal fitness. We then advance a biophysical model of protein evolution that helps us to understand phenomena that range from the dynamics of molecular adaptation to the clock-like rate of protein evolution.

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Year:  2005        PMID: 16074985     DOI: 10.1038/nrg1672

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  290 in total

Review 1.  The interface of protein structure, protein biophysics, and molecular evolution.

Authors:  David A Liberles; Sarah A Teichmann; Ivet Bahar; Ugo Bastolla; Jesse Bloom; Erich Bornberg-Bauer; Lucy J Colwell; A P Jason de Koning; Nikolay V Dokholyan; Julian Echave; Arne Elofsson; Dietlind L Gerloff; Richard A Goldstein; Johan A Grahnen; Mark T Holder; Clemens Lakner; Nicholas Lartillot; Simon C Lovell; Gavin Naylor; Tina Perica; David D Pollock; Tal Pupko; Lynne Regan; Andrew Roger; Nimrod Rubinstein; Eugene Shakhnovich; Kimmen Sjölander; Shamil Sunyaev; Ashley I Teufel; Jeffrey L Thorne; Joseph W Thornton; Daniel M Weinreich; Simon Whelan
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

2.  Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes.

Authors:  Chris R Feldman; Edmund D Brodie; Edmund D Brodie; Michael E Pfrender
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

3.  The nearly neutral and selection theories of molecular evolution under the fisher geometrical framework: substitution rate, population size, and complexity.

Authors:  Pablo Razeto-Barry; Javier Díaz; Rodrigo A Vásquez
Journal:  Genetics       Date:  2012-03-16       Impact factor: 4.562

4.  Deciphering modern glucocorticoid cross-pharmacology using ancestral corticosteroid receptors.

Authors:  Jeffrey A Kohn; Kirti Deshpande; Eric A Ortlund
Journal:  J Biol Chem       Date:  2012-03-21       Impact factor: 5.157

Review 5.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

6.  Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.

Authors:  Corwin Miller; Milya Davlieva; Corey Wilson; Kristopher I White; Rafael Couñago; Gang Wu; Jeffrey C Myers; Pernilla Wittung-Stafshede; Yousif Shamoo
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

7.  Sequence space and the ongoing expansion of the protein universe.

Authors:  Inna S Povolotskaya; Fyodor A Kondrashov
Journal:  Nature       Date:  2010-05-19       Impact factor: 49.962

Review 8.  The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts.

Authors:  R Craig MacLean; Alex R Hall; Gabriel G Perron; Angus Buckling
Journal:  Nat Rev Genet       Date:  2010-06       Impact factor: 53.242

9.  Limits to Compensatory Mutations: Insights from Temperature-Sensitive Alleles.

Authors:  Katarzyna Tomala; Piotr Zrebiec; Daniel L Hartl
Journal:  Mol Biol Evol       Date:  2019-09-01       Impact factor: 16.240

Review 10.  Directed polymerase evolution.

Authors:  Tingjian Chen; Floyd E Romesberg
Journal:  FEBS Lett       Date:  2013-11-05       Impact factor: 4.124

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