Literature DB >> 16050094

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.

Daniel M Weinreich1, Richard A Watson, Lin Chao.   

Abstract

Epistasis for fitness means that the selective effect of a mutation is conditional on the genetic background in which it appears. Although epistasis is widely observed in nature, our understanding of its consequences for evolution by natural selection remains incomplete. In particular, much attention focuses only on its influence on the instantaneous rate of changes in frequency of selected alleles via epistatic contribution to the additive genetic variance for fitness. Thus, in this framework epistasis only has evolutionary importance if the interacting loci are simultaneously segregating in the population. However, the selective accessibility of mutational trajectories to high fitness genotypes may depend on the genetic background in which novel mutations appear, and this effect is independent of population polymorphism at other loci. Here we explore this second influence of epistasis on evolution by natural selection. We show that it is the consequence of a particular form of epistasis, which we designate sign epistasis. Sign epistasis means that the sign of the fitness effect of a mutation is under epistatic control; thus, such a mutation is beneficial on some genetic backgrounds and deleterious on others. Recent experimental innovations in microbial systems now permit assessment of the fitness effects of individual mutations on multiple genetic backgrounds. We review this literature and identify many examples of sign epistasis, and we suggest that the implications of these results may generalize to other organisms. These theoretical and empirical considerations imply that strong genetic constraint on the selective accessibility of trajectories to high fitness genotypes may exist and suggest specific areas of investigation for future research.

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Year:  2005        PMID: 16050094

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  271 in total

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Journal:  Orig Life Evol Biosph       Date:  2014-11-16       Impact factor: 1.950

2.  Epistasis can lead to fragmented neutral spaces and contingency in evolution.

Authors:  Steffen Schaper; Iain G Johnston; Ard A Louis
Journal:  Proc Biol Sci       Date:  2011-12-07       Impact factor: 5.349

3.  Amino acid coevolution induces an evolutionary Stokes shift.

Authors:  David D Pollock; Grant Thiltgen; Richard A Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-30       Impact factor: 11.205

4.  Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus.

Authors:  J Lalić; S F Elena
Journal:  Heredity (Edinb)       Date:  2012-04-11       Impact factor: 3.821

5.  Environmental change exposes beneficial epistatic interactions in a catalytic RNA.

Authors:  Eric J Hayden; Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-06-20       Impact factor: 5.349

6.  Role of conservative mutations in protein multi-property adaptation.

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Journal:  Biochem J       Date:  2010-07-15       Impact factor: 3.857

7.  Sequence space and the ongoing expansion of the protein universe.

Authors:  Inna S Povolotskaya; Fyodor A Kondrashov
Journal:  Nature       Date:  2010-05-19       Impact factor: 49.962

8.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

9.  The peaks and geometry of fitness landscapes.

Authors:  Kristina Crona; Devin Greene; Miriam Barlow
Journal:  J Theor Biol       Date:  2012-10-02       Impact factor: 2.691

10.  Minimum epistasis interpolation for sequence-function relationships.

Authors:  Juannan Zhou; David M McCandlish
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

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