Literature DB >> 16042418

Hairpin folding dynamics: the cold-denatured state is predisposed for rapid refolding.

R Brian Dyer1, Shelia J Maness, Stefan Franzen, R Matthew Fesinmeyer, Katherine A Olsen, Niels H Andersen.   

Abstract

Cold denaturation is a general phenomenon in globular proteins, and the associated cold-denatured states of proteins have important fundamental and practical significance. Here, we have characterized the cold-denatured state of a beta-hairpin forming peptide, MrH3a, in 8% hexafluoro-2-propanol (HFIP) and the dynamics of its refolding following a laser-induced T-jump. Beta-hairpins constitute an important class of protein structural elements, yet their folding mechanisms are not fully understood. Characterization of MrH3a using NMR, CD, and IR spectroscopies reveals residual structure in the cold-denatured state, in contrast with the highly disordered heat-denatured state. The residual structure in the cold-denatured state comprises relatively compact and solvent protected conformations. Furthermore, we find a substantial acceleration in the rate of folding from the cold-denatured state compared to that of the heat-denatured state. In addition, the cold-denatured state is not populated in 20% HFIP; folding occurs only from the fully unfolded state and is significantly slower. We interpret the acceleration of the folding rate of MrH3a in 8% HFIP as a direct consequence of the collapsed conformations of the cold-denatured state. Finally, there may be some reduction of the loop search cost when starting from the cold-denatured state, since this state may have some of the stabilizing cross-strand interactions already formed.

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Year:  2005        PMID: 16042418     DOI: 10.1021/bi050698z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Hairpin folding rates reflect mutations within and remote from the turn region.

Authors:  Katherine A Olsen; R Matthew Fesinmeyer; James M Stewart; Niels H Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-14       Impact factor: 11.205

2.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

3.  Conformationally constrained peptides from CD2 to modulate protein-protein interactions between CD2 and CD58.

Authors:  Ameya Gokhale; Thomas K Weldeghiorghis; Veena Taneja; Seetharama D Satyanarayanajois
Journal:  J Med Chem       Date:  2011-07-14       Impact factor: 7.446

4.  13C structuring shifts for the analysis of model β-hairpins and β-sheets in proteins: diagnostic shifts appear only at the cross-strand H-bonded residues.

Authors:  Irene Shu; Michele Scian; James M Stewart; Brandon L Kier; Niels H Andersen
Journal:  J Biomol NMR       Date:  2013-07-14       Impact factor: 2.835

5.  Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.

Authors:  Kevin C Jones; Chunte Sam Peng; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

6.  Studies of helix fraying and solvation using 13C' isotopomers.

Authors:  R Matthew Fesinmeyer; Eric S Peterson; R Brian Dyer; Niels H Andersen
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

7.  Dodine as a protein denaturant: the best of two worlds?

Authors:  Hannah Gelman; Tatyana Perlova; Martin Gruebele
Journal:  J Phys Chem B       Date:  2013-08-16       Impact factor: 2.991

8.  Aryl-aryl interactions in designed peptide folds: Spectroscopic characteristics and optimal placement for structure stabilization.

Authors:  Jordan M Anderson; Brandon L Kier; Brice Jurban; Aimee Byrne; Irene Shu; Lisa A Eidenschink; Alexander A Shcherbakov; Mike Hudson; R M Fesinmeyer; Niels H Andersen
Journal:  Biopolymers       Date:  2016-06       Impact factor: 2.505

9.  Probing the lower size limit for protein-like fold stability: ten-residue microproteins with specific, rigid structures in water.

Authors:  Brandon L Kier; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2008-10-09       Impact factor: 15.419

10.  Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.

Authors:  Lisa Eidenschink; Brandon L Kier; Kelly N L Huggins; Niels H Andersen
Journal:  Proteins       Date:  2009-05-01
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