Literature DB >> 16009938

Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain.

Katherine M Brendza1, Wei Cheng, Christopher J Fischer, Marla A Chesnik, Anita Niedziela-Majka, Timothy M Lohman.   

Abstract

DNA helicases catalyze separation of double-helical DNA into its complementary single strands, a process essential for DNA replication, recombination, and repair. The Escherichia coli Rep protein, a superfamily 1 DNA helicase, functions in DNA replication restart and is required for replication of several bacteriophages. Monomers of Rep do not display helicase activity in vitro; in fact, DNA unwinding requires Rep dimerization. Here we show that removal of the 2B subdomain of Rep to form RepDelta2B activates monomer helicase activity, albeit with limited processivity. Although both full length Rep and RepDelta2B monomers can translocate with 3' to 5' directionality along single-stranded DNA, the 2B subdomain inhibits the helicase activity of full length Rep. This suggests an autoregulatory mechanism for Rep helicase, which may apply to other nonhexameric helicases, whereby helicase activity is regulated by the rotational conformational state of the 2B subdomain; formation of a Rep dimer may relieve autoinhibition by altering the 2B subdomain orientation.

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Year:  2005        PMID: 16009938      PMCID: PMC1177377          DOI: 10.1073/pnas.0502886102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

Authors:  P Soultanas; M S Dillingham; P Wiley; M R Webb; D B Wigley
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

2.  Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase.

Authors:  Taekjip Ha; Ivan Rasnik; Wei Cheng; Hazen P Babcock; George H Gauss; Timothy M Lohman; Steven Chu
Journal:  Nature       Date:  2002-10-10       Impact factor: 49.962

3.  Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks.

Authors:  Martin R Singleton; Mark S Dillingham; Martin Gaudier; Stephen C Kowalczykowski; Dale B Wigley
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

4.  Crystal structure of a DExx box DNA helicase.

Authors:  H S Subramanya; L E Bird; J A Brannigan; D B Wigley
Journal:  Nature       Date:  1996-11-28       Impact factor: 49.962

Review 5.  DNA helicases: enzymes with essential roles in all aspects of DNA metabolism.

Authors:  S W Matson; D W Bean; J W George
Journal:  Bioessays       Date:  1994-01       Impact factor: 4.345

Review 6.  RecQ helicases: caretakers of the genome.

Authors:  Ian D Hickson
Journal:  Nat Rev Cancer       Date:  2003-03       Impact factor: 60.716

Review 7.  Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes.

Authors:  Emmanuelle Delagoutte; Peter H von Hippel
Journal:  Q Rev Biophys       Date:  2003-02       Impact factor: 5.318

8.  The 2B domain of the Escherichia coli Rep protein is not required for DNA helicase activity.

Authors:  Wei Cheng; Katherine M Brendza; George H Gauss; Sergey Korolev; Gabriel Waksman; Timothy M Lohman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-19       Impact factor: 11.205

9.  DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies.

Authors:  Aaron L Lucius; Alessandro Vindigni; Razmic Gregorian; Janid A Ali; Andrew F Taylor; Gerald R Smith; Timothy M Lohman
Journal:  J Mol Biol       Date:  2002-11-29       Impact factor: 5.469

10.  DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes.

Authors:  Ivan Rasnik; Sua Myong; Wei Cheng; Timothy M Lohman; Taekjip Ha
Journal:  J Mol Biol       Date:  2004-02-13       Impact factor: 5.469

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  79 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  RecQ helicase translocates along single-stranded DNA with a moderate processivity and tight mechanochemical coupling.

Authors:  Kata Sarlós; Máté Gyimesi; Mihály Kovács
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

3.  Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC.

Authors:  Shuja Shafi Malik; Evan Rich; Ramya Viswanathan; Bradley R Cairns; Christopher J Fischer
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

4.  PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps.

Authors:  Jeehae Park; Sua Myong; Anita Niedziela-Majka; Kyung Suk Lee; Jin Yu; Timothy M Lohman; Taekjip Ha
Journal:  Cell       Date:  2010-08-20       Impact factor: 41.582

5.  Recombination hotspots attenuate the coupled ATPase and translocase activities of an AddAB-type helicase-nuclease.

Authors:  Neville S Gilhooly; Mark S Dillingham
Journal:  Nucleic Acids Res       Date:  2014-03-15       Impact factor: 16.971

6.  Temperature-independent porous nanocontainers for single-molecule fluorescence studies.

Authors:  Yuji Ishitsuka; Burak Okumus; Sinan Arslan; Kok Hao Chen; Taekjip Ha
Journal:  Anal Chem       Date:  2010-11-01       Impact factor: 6.986

7.  Structure-based model of the stepping motor of PcrA helicase.

Authors:  Jin Yu; Taekjip Ha; Klaus Schulten
Journal:  Biophys J       Date:  2006-06-30       Impact factor: 4.033

8.  UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke.

Authors:  Jae Young Lee; Wei Yang
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

9.  UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus.

Authors:  Richard C Centore; Michael C Leeson; Steven J Sandler
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

10.  DNA binding to RecD: role of the 1B domain in SF1B helicase activity.

Authors:  Kayarat Saikrishnan; Stuart P Griffiths; Nicola Cook; Robert Court; Dale B Wigley
Journal:  EMBO J       Date:  2008-07-31       Impact factor: 11.598

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