Literature DB >> 16009429

The enhancement of PCR amplification of a random sequence DNA library by DMSO and betaine: application to in vitro combinatorial selection of aptamers.

Jonghoon Kang1, Myung Soog Lee, David G Gorenstein.   

Abstract

A PCR method for uniform amplification of a random sequence DNA library is described. A combination of 1 M betaine and 5% DMSO improves the PCR amplification by increasing the ratio of full-length products to shortened products, which are a consequence of nonuniform amplification due to stable secondary structures in the templates. This method is expected to be beneficial for obtaining high-affinity aptamers with stable secondary structures.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16009429     DOI: 10.1016/j.jbbm.2005.06.003

Source DB:  PubMed          Journal:  J Biochem Biophys Methods        ISSN: 0165-022X


  22 in total

1.  A new rapid amplification of cDNA ends method for extremely guanine plus cytosine-rich genes.

Authors:  Xianzong Shi; Donald L Jarvis
Journal:  Anal Biochem       Date:  2006-07-10       Impact factor: 3.365

2.  An improved non-enzymatic "DNA ladder assay" for more sensitive and early detection of apoptosis.

Authors:  Shubhankar Suman; Akshay Pandey; Sudhir Chandna
Journal:  Cytotechnology       Date:  2011-09-24       Impact factor: 2.058

3.  Utility of amplification enhancers in low copy number DNA analysis.

Authors:  Pamela L Marshall; Jonathan L King; Bruce Budowle
Journal:  Int J Legal Med       Date:  2014-05-22       Impact factor: 2.686

4.  Optimization of PCR conditions for amplification of GC-Rich EGFR promoter sequence.

Authors:  Jasmina Obradovic; Vladimir Jurisic; Natasa Tosic; Jasminka Mrdjanovic; Branislav Perin; Sonja Pavlovic; Natasa Djordjevic
Journal:  J Clin Lab Anal       Date:  2013-11       Impact factor: 2.352

5.  Direct DNA amplification from crude clinical samples using a PCR enhancer cocktail and novel mutants of Taq.

Authors:  Zhian Zhang; Milko B Kermekchiev; Wayne M Barnes
Journal:  J Mol Diagn       Date:  2010-01-14       Impact factor: 5.568

6.  A fundamental study of the PCR amplification of GC-rich DNA templates.

Authors:  T G Mamedov; E Pienaar; S E Whitney; J R TerMaat; G Carvill; R Goliath; A Subramanian; H J Viljoen
Journal:  Comput Biol Chem       Date:  2008-07-25       Impact factor: 2.877

7.  Molecular Detection of New Delhi Metallo-Beta-Lactamase-1 (NDM-1) Positive Bacteria from Environmental and Drinking Water Samples by Loop Mediated Isothermal Amplification of bla NDM-1.

Authors:  P Rathinasabapathi; Deepak S Hiremath; Rex Arunraj; M Parani
Journal:  Indian J Microbiol       Date:  2015-06-24       Impact factor: 2.461

8.  Particle display: a quantitative screening method for generating high-affinity aptamers.

Authors:  Jinpeng Wang; Qiang Gong; Nupur Maheshwari; Michael Eisenstein; Mary Luz Arcila; Kenneth S Kosik; H Tom Soh
Journal:  Angew Chem Int Ed Engl       Date:  2014-03-18       Impact factor: 15.336

9.  Betaine, dimethyl sulfoxide, and 7-deaza-dGTP, a powerful mixture for amplification of GC-rich DNA sequences.

Authors:  Marco Musso; Renata Bocciardi; Sara Parodi; Roberto Ravazzolo; Isabella Ceccherini
Journal:  J Mol Diagn       Date:  2006-11       Impact factor: 5.568

10.  PCR on yeast colonies: an improved method for glyco-engineered Saccharomyces cerevisiae.

Authors:  Christine Bonnet; Céline Rigaud; Emilie Chanteclaire; Claire Blandais; Emilie Tassy-Freches; Christelle Arico; Christophe Javaud
Journal:  BMC Res Notes       Date:  2013-05-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.