Literature DB >> 21948063

An improved non-enzymatic "DNA ladder assay" for more sensitive and early detection of apoptosis.

Shubhankar Suman1, Akshay Pandey, Sudhir Chandna.   

Abstract

Conventional DNA ladder assay has certain shortcomings such as loss of DNA fragments during sample processing, involvement of multiple steps and requirement of expensive reagents. The present study demonstrates a rapid, easy-to-perform cost-effective method for detection of apoptotic DNA fragments with considerable improvement in the sensitivity by avoiding loss of DNA fragments. It involves a few minutes of procedure involving direct lysis of cells with dimethyl sulphoxide (DMSO), brief vortexing, addition of 2% SDS-TE buffer, and a single step of centrifugation. This cost- and time-efficient method reduces the assay time considerably and can be used for a large number of samples with excellent sensitivity.

Entities:  

Year:  2011        PMID: 21948063      PMCID: PMC3261451          DOI: 10.1007/s10616-011-9395-0

Source DB:  PubMed          Journal:  Cytotechnology        ISSN: 0920-9069            Impact factor:   2.058


  27 in total

1.  Radiation responses of Sf9, a highly radioresistant lepidopteran insect cell line.

Authors:  S Chandna; B S Dwarakanath; R K Seth; D Khaitan; J S Adhikari; V Jain
Journal:  Int J Radiat Biol       Date:  2004-04       Impact factor: 2.694

2.  Evaluation of glucocorticoid-induced DNA fragmentation in mouse thymocytes by flow cytometry.

Authors:  W G Telford; L E King; P J Fraker
Journal:  Cell Prolif       Date:  1991-09       Impact factor: 6.831

3.  Stress response of a p53 homologue in the radioresistant Sf9 insect cells.

Authors:  Shubhankar Suman; Divya Khaitan; Uttam Pati; Rakesh Kumar Seth; Sudhir Chandna
Journal:  Int J Radiat Biol       Date:  2009-03       Impact factor: 2.694

Review 4.  Apoptosis detection: an overview.

Authors:  R Sgonc; J Gruber
Journal:  Exp Gerontol       Date:  1998-09       Impact factor: 4.032

5.  A simple method for accurate estimation of apoptotic cells.

Authors:  N P Singh
Journal:  Exp Cell Res       Date:  2000-04-10       Impact factor: 3.905

6.  Isolation of genomic DNA.

Authors:  B G Herrmann; A M Frischauf
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

7.  A rapid and sensitive assay for the detection of DNA fragmentation during early phases of apoptosis.

Authors:  A G Basnakian; S J James
Journal:  Nucleic Acids Res       Date:  1994-07-11       Impact factor: 16.971

8.  In vivo DNA degradation in thymocytes of gamma-irradiated or hydrocortisone-treated rats.

Authors:  S R Umansky; B A Korol'; P A Nelipovich
Journal:  Biochim Biophys Acta       Date:  1981-08-27

9.  Protein precipitation and denaturation by dimethyl sulfoxide.

Authors:  Tsutomu Arakawa; Yoshiko Kita; Serge N Timasheff
Journal:  Biophys Chem       Date:  2007-09-19       Impact factor: 2.352

Review 10.  Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics.

Authors:  J F Kerr; A H Wyllie; A R Currie
Journal:  Br J Cancer       Date:  1972-08       Impact factor: 7.640

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  15 in total

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Journal:  Tumour Biol       Date:  2016-06-27

2.  Radioresistant Sf9 insect cells readily undergo an intrinsic mode of apoptosis in response to histone deacetylase (HDAC) inhibition.

Authors:  Jyoti Swaroop Kumar; Shubhankar Suman; Sudhir Chandna
Journal:  Mol Cell Biochem       Date:  2017-12-13       Impact factor: 3.396

Review 3.  An overview of apoptosis assays detecting DNA fragmentation.

Authors:  Pavlína Majtnerová; Tomáš Roušar
Journal:  Mol Biol Rep       Date:  2018-07-18       Impact factor: 2.316

4.  Exploring the Pattern of Metabolic Alterations Causing Energy Imbalance via PPARα Dysregulation in Cardiac Muscle During Doxorubicin Treatment.

Authors:  Kaviyarasi Renu; Sathishkumar Vinayagam; Harishkumar Madhyastha; Radha Madhyastha; Masugi Maruyama; Shubhankar Suman; Sankarganesh Arunachalam; Balachandar Vellingiri; Abilash Valsala Gopalakrishnan
Journal:  Cardiovasc Toxicol       Date:  2022-02-14       Impact factor: 3.231

5.  An update to DNA ladder assay for apoptosis detection.

Authors:  Yalda Rahbar Saadat; Nazli Saeidi; Sepideh Zununi Vahed; Abolfazl Barzegari; Jaleh Barar
Journal:  Bioimpacts       Date:  2015-02-21

6.  Targeting the epigenetics of the DNA damage response in breast cancer.

Authors:  M F Montenegro; R González-Guerrero; L Sánchez-del-Campo; A Piñero-Madrona; J Cabezas-Herrera; J N Rodríguez-López
Journal:  Cell Death Dis       Date:  2016-04-07       Impact factor: 8.469

7.  Fever-range hyperthermia improves the anti-apoptotic effect induced by low pH on human neutrophils promoting a proangiogenic profile.

Authors:  Fernando Erra Díaz; Ezequiel Dantas; Maia Cabrera; Constanza A Benítez; María V Delpino; Gabriel Duette; Julia Rubione; Norberto Sanjuan; Analía S Trevani; Jorge Geffner
Journal:  Cell Death Dis       Date:  2016-10-27       Impact factor: 8.469

8.  Endometrial cancer cells exhibit high expression of p110β and its selective inhibition induces variable responses on PI3K signaling, cell survival and proliferation.

Authors:  Thomas Karlsson; Camilla Krakstad; Ingvild Løberg Tangen; Erling A Hoivik; Pamela M Pollock; Helga B Salvesen; Aurélia E Lewis
Journal:  Oncotarget       Date:  2017-01-17

Review 9.  Regulation of Tumor Progression by Programmed Necrosis.

Authors:  Su Yeon Lee; Min Kyung Ju; Hyun Min Jeon; Eui Kyong Jeong; Yig Ji Lee; Cho Hee Kim; Hye Gyeong Park; Song Iy Han; Ho Sung Kang
Journal:  Oxid Med Cell Longev       Date:  2018-01-31       Impact factor: 6.543

10.  CdO nanoparticles, c-MWCNT nanoparticles and CdO nanoparticles/c-MWCNT nanocomposite fibres: in vitro assessment of anti-proliferative and apoptotic studies in HeLa cancer cell line.

Authors:  Jayaraman Saranya; Balakrishnapillai Suseela Sreeja; Gurunathan Padmalaya; Sankararajan Radha; Ponnusamy Senthil Kumar
Journal:  IET Nanobiotechnol       Date:  2020-10       Impact factor: 1.847

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