Literature DB >> 15993405

In vivo analysis of mRNA stability using the Tet-Off system in the chicken embryo.

Valérie Hilgers1, Olivier Pourquié, Julien Dubrulle.   

Abstract

The rate of mRNA degradation plays an important role in the control of gene expression. The mRNA stability is mainly dependent on cis-regulatory elements contained in the 3' or 5' untranslated region (UTR) of the mature mRNAs, and its regulation is an efficient way to adapt the level of a given transcript in the cell. Although this process has been well studied in cell culture, little is known about mRNA stability during embryonic development. Here, we describe an assay that combines the tetracyclin-dependent inducible system Tet-Off with in ovo electroporation to monitor mRNA stability in the chick neural tube. We show, by using the GFP intensity as an indirect reporter system, that the 3'UTR of Lunatic Fringe strongly destabilizes transcripts, while transcripts bearing the 3'UTR of Fgf8 are much more stable. This simple assay provides a powerful tool to study mRNA dynamics in vivo.

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Year:  2005        PMID: 15993405     DOI: 10.1016/j.ydbio.2005.05.021

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  11 in total

1.  Putative binding sites for mir-125 family miRNAs in the mouse Lfng 3'UTR affect transcript expression in the segmentation clock, but mir-125a-5p is dispensable for normal somitogenesis.

Authors:  Kanu Wahi; Sophia Friesen; Vincenzo Coppola; Susan E Cole
Journal:  Dev Dyn       Date:  2017-08-18       Impact factor: 3.780

2.  Electroporation: an arsenal of application.

Authors:  Ti-Fei Yuan
Journal:  Cytotechnology       Date:  2007-06-16       Impact factor: 2.058

3.  Synonymous codon changes in the oncogenes of the cottontail rabbit papillomavirus lead to increased oncogenicity and immunogenicity of the virus.

Authors:  Nancy M Cladel; Lynn R Budgeon; Jiafen Hu; Karla K Balogh; Neil D Christensen
Journal:  Virology       Date:  2013-02-20       Impact factor: 3.616

Review 4.  Signalling dynamics in vertebrate segmentation.

Authors:  Alexis Hubaud; Olivier Pourquié
Journal:  Nat Rev Mol Cell Biol       Date:  2014-11       Impact factor: 94.444

5.  Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation.

Authors:  Thomas L Gallagher; Kiel T Tietz; Zachary T Morrow; Jasmine M McCammon; Michael L Goldrich; Nicolas L Derr; Sharon L Amacher
Journal:  Dev Biol       Date:  2017-06-23       Impact factor: 3.582

6.  Mir-125a-5p-mediated regulation of Lfng is essential for the avian segmentation clock.

Authors:  Maurisa F Riley; Matthew S Bochter; Kanu Wahi; Gerard J Nuovo; Susan E Cole
Journal:  Dev Cell       Date:  2013-03-11       Impact factor: 12.270

Review 7.  Rediscovering the chick embryo as a model to study retinal development.

Authors:  M Natalia Vergara; M Valeria Canto-Soler
Journal:  Neural Dev       Date:  2012-06-27       Impact factor: 3.842

8.  A balance of positive and negative regulators determines the pace of the segmentation clock.

Authors:  Guy Wiedermann; Robert Alexander Bone; Joana Clara Silva; Mia Bjorklund; Philip J Murray; J Kim Dale
Journal:  Elife       Date:  2015-09-10       Impact factor: 8.140

9.  Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease.

Authors:  Lela Lackey; Aaztli Coria; Auyon J Ghosh; Phil Grayeski; Abigail Hatfield; Vijay Shankar; John Platig; Zhonghui Xu; Silvia B V Ramos; Edwin K Silverman; Victor E Ortega; Michael H Cho; Craig P Hersh; Brian D Hobbs; Peter Castaldi; Alain Laederach
Journal:  PLoS Genet       Date:  2021-11-16       Impact factor: 5.917

10.  Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.

Authors:  Antoine Graindorge; Raphaël Thuret; Nicolas Pollet; H Beverley Osborne; Yann Audic
Journal:  Nucleic Acids Res       Date:  2006-02-07       Impact factor: 16.971

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