Literature DB >> 1598239

Compilation of DNA sequences of Escherichia coli (update 1992).

M Kröger1, R Wahl, G Schachtel, P Rice.   

Abstract

We have compiled the DNA sequence data for E. coli available from the GENBANK and EMBL data libraries and over a period of several years independently from the literature. This is the fourth listing replacing and increasing the former listings substantially. However, in order to save space this printed version contains DNA sequence information only, if they are publically available in electronic form. The complete compilation including a full set of genetic map data and the E. coli protein index can be obtained in machine readable form from the EMBL data library (ECD release 10) or from the CD-ROM version of this supplement issue directly. After deletion of all detected overlaps a total of 1,820,237 individual bp is found to be determined till the beginning of 1992. This corresponds to a total of 38.56% of the entire E. coli chromosome consisting of about 4,720 kbp. This number may actually be higher by some extra 2.5% derived from lysogenic bacteriophage lambda and various DNA sequences already received for other strains of E. coli.

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Year:  1992        PMID: 1598239      PMCID: PMC333988          DOI: 10.1093/nar/20.suppl.2119

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; N Dank; S Nock; A Schön
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

2.  Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra- and pentanucleotide sequences related to VSP DNA mismatch repair.

Authors:  R Merkl; M Kröger; P Rice; H J Fritz
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

3.  The gene-protein database of Escherichia coli: edition 4.

Authors:  R A VanBogelen; F C Neidhardt
Journal:  Electrophoresis       Date:  1991-11       Impact factor: 3.535

4.  The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.

Authors:  Y Kohara; K Akiyama; K Isono
Journal:  Cell       Date:  1987-07-31       Impact factor: 41.582

5.  Compilation of DNA sequences of Escherichia coli (update 1991).

Authors:  M Kröger; R Wahl; P Rice
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

6.  Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

Authors:  K E Rudd; W Miller; J Ostell; D A Benson
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

7.  Complete maps of IS1, IS2, IS3, IS4, IS5, IS30 and IS150 locations in Escherichia coli K12.

Authors:  R P Birkenbihl; W Vielmetter
Journal:  Mol Gen Genet       Date:  1989-12

8.  Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F' factors and in rearrangement of bacterial chromosomes.

Authors:  M Umeda; E Ohtsubo
Journal:  J Mol Biol       Date:  1989-08-20       Impact factor: 5.469

9.  Escherichia coli molecular genetic map (1000 kbp): update I.

Authors:  C Médigue; A Hénaut; A Danchin
Journal:  Mol Microbiol       Date:  1990-09       Impact factor: 3.501

10.  Escherichia coli molecular genetic map (1500 kbp): update II.

Authors:  C Médigue; A Viari; A Hénaut; A Danchin
Journal:  Mol Microbiol       Date:  1991-11       Impact factor: 3.501

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  14 in total

1.  Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC (update 1996).

Authors:  M Kröger; R Wahl
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

2.  Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS.

Authors:  T Yoshida; C Ueguchi; T Mizuno
Journal:  J Bacteriol       Date:  1993-12       Impact factor: 3.490

3.  The EMBL data library.

Authors:  C M Rice; R Fuchs; D G Higgins; P J Stoehr; G N Cameron
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

4.  Physical and genetic mapping of the tag gene on the Escherichia coli chromosome.

Authors:  E Seeberg
Journal:  J Bacteriol       Date:  1993-09       Impact factor: 3.490

5.  Efficient large-scale sequencing of the Escherichia coli genome: implementation of a transposon- and PCR-based strategy for the analysis of ordered lambda phage clones.

Authors:  H Kasai; S Isono; M Kitakawa; J Mineno; H Akiyama; D M Kurnit; D E Berg; K Isono
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

6.  Comparative DNA sequence features in two long Escherichia coli contigs.

Authors:  L R Cardon; C Burge; G A Schachtel; B E Blaisdell; S Karlin
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

7.  Compilation of DNA sequences of Escherichia coli (update 1993).

Authors:  M Kröger; R Wahl; P Rice
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

8.  ECD--a totally integrated database of Escherichia coli K12.

Authors:  R Wahl; P Rice; C M Rice; M Kröger
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

9.  Genes for components of the chloroplast translational apparatus are conserved in the reduced 73-kb plastid DNA of the nonphotosynthetic euglenoid flagellate Astasia longa.

Authors:  G Gockel; W Hachtel; S Baier; C Fliss; M Henke
Journal:  Curr Genet       Date:  1994-09       Impact factor: 3.886

10.  Expression of Caulobacter dnaA as a function of the cell cycle.

Authors:  G Zweiger; L Shapiro
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

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